1owm: Difference between revisions

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{{Seed}}
[[Image:1owm.png|left|200px]]


<!--
==DATA1:DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2==
The line below this paragraph, containing "STRUCTURE_1owm", creates the "Structure Box" on the page.
<StructureSection load='1owm' size='340' side='right'caption='[[1owm]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1owm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus_PCC_6301 Synechococcus elongatus PCC 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OWM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_1owm|  PDB=1owm  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1owm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1owm OCA], [https://pdbe.org/1owm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1owm RCSB], [https://www.ebi.ac.uk/pdbsum/1owm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1owm ProSAT]</span></td></tr>
 
</table>
===DATA1:DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2===
== Function ==
 
[https://www.uniprot.org/uniprot/PHR_SYNP6 PHR_SYNP6] Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_15213381}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15213381 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ow/1owm_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15213381}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1OWM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Synechococcus_sp. Synechococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OWM OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1owm ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction., Kort R, Komori H, Adachi S, Miki K, Eker A, Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1205-13. Epub 2004, Jun 22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15213381 15213381]
</StructureSection>
 
[[Category: Large Structures]]
Crystallography &amp; NMR system: A new software suite for macromolecular structure determination., Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL, Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9757107 9757107]
[[Category: Synechococcus elongatus PCC 6301]]
[[Category: Deoxyribodipyrimidine photo-lyase]]
[[Category: Adachi S]]
[[Category: Single protein]]
[[Category: Eker A]]
[[Category: Synechococcus sp.]]
[[Category: Komori H]]
[[Category: Adachi, S.]]
[[Category: Kort R]]
[[Category: Eker, A.]]
[[Category: Miki K]]
[[Category: Komori, H.]]
[[Category: Kort, R.]]
[[Category: Miki, K.]]
[[Category: Dna repair]]
[[Category: Flavin enzyme]]
[[Category: Photoreactivating enzyme]]
 
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Retrieved from "https://proteopedia.org/1owm"