2fgr: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2fgr.png|left|200px]]


<!--
==High resolution Xray structure of Omp32==
The line below this paragraph, containing "STRUCTURE_2fgr", creates the "Structure Box" on the page.
<StructureSection load='2fgr' size='340' side='right'caption='[[2fgr]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2fgr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Delftia_acidovorans Delftia acidovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FGR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FGR FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2fgr|  PDB=2fgr |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fgr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fgr OCA], [https://pdbe.org/2fgr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fgr RCSB], [https://www.ebi.ac.uk/pdbsum/2fgr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fgr ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/OMP32_DELAC OMP32_DELAC]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/2fgr_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fgr ConSurf].
<div style="clear:both"></div>


===High resolution Xray structure of Omp32===
==See Also==
 
*[[Porin 3D structures|Porin 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_16434398}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 16434398 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_16434398}}
 
==About this Structure==
2FGR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Delftia_acidovorans Delftia acidovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FGR OCA].
 
==Reference==
High resolution crystal structures and molecular dynamics studies reveal substrate binding in the porin Omp32., Zachariae U, Kluhspies T, De S, Engelhardt H, Zeth K, J Biol Chem. 2006 Mar 17;281(11):7413-20. Epub 2006 Jan 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16434398 16434398]
[[Category: Delftia acidovorans]]
[[Category: Delftia acidovorans]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Engelhardt, H.]]
[[Category: Engelhardt H]]
[[Category: Zachariae, U.]]
[[Category: Zachariae U]]
[[Category: Zeth, K.]]
[[Category: Zeth K]]
[[Category: Omp32 porin outer membrane protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 12:54:04 2008''

Latest revision as of 09:23, 14 February 2024

High resolution Xray structure of Omp32

2fgr, resolution 1.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=2fgr&oldid=4058429"