1ucs: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1ucs.png|left|200px]]


<!--
==Type III Antifreeze Protein RD1 from an Antarctic Eel Pout==
The line below this paragraph, containing "STRUCTURE_1ucs", creates the "Structure Box" on the page.
<StructureSection load='1ucs' size='340' side='right'caption='[[1ucs]], [[Resolution|resolution]] 0.62&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ucs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lycodichthys_dearborni Lycodichthys dearborni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UCS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UCS FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.62&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ucs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ucs OCA], [https://pdbe.org/1ucs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ucs RCSB], [https://www.ebi.ac.uk/pdbsum/1ucs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ucs ProSAT]</span></td></tr>
{{STRUCTURE_1ucs| PDB=1ucs |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/ANP1_LYCDA ANP1_LYCDA] Contributes to protect fish blood from freezing at subzero sea water temperatures. Lowers the blood freezing point. Binds to nascent ice crystals and prevents further growth (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uc/1ucs_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ucs ConSurf].
<div style="clear:both"></div>


===Type III Antifreeze Protein RD1 from an Antarctic Eel Pout===
==See Also==
 
*[[Antifreeze protein 3D structures|Antifreeze protein 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_12547803}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 12547803 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_12547803}}
 
==About this Structure==
1UCS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lycodichthys_dearborni Lycodichthys dearborni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UCS OCA].
 
==Reference==
The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-A resolution reveals structural microheterogeneity of protein and solvation., Ko TP, Robinson H, Gao YG, Cheng CH, DeVries AL, Wang AH, Biophys J. 2003 Feb;84(2 Pt 1):1228-37. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12547803 12547803]
[[Category: Lycodichthys dearborni]]
[[Category: Lycodichthys dearborni]]
[[Category: Single protein]]
[[Category: Cheng C-HC]]
[[Category: Cheng, C H.C.]]
[[Category: DeVries AL]]
[[Category: DeVries, A L.]]
[[Category: Gao Y-G]]
[[Category: Gao, Y G.]]
[[Category: Ko T-P]]
[[Category: Ko, T P.]]
[[Category: Robinson H]]
[[Category: Robinson, H.]]
[[Category: Wang AH-J]]
[[Category: Wang, A H.J.]]
[[Category: Pretzel fold]]
[[Category: Small beta barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 13:48:12 2008''
Retrieved from "https://proteopedia.org/1ucs"