2r9q: Difference between revisions

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{{Seed}}
[[Image:2r9q.png|left|200px]]


<!--
==Crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from Agrobacterium tumefaciens==
The line below this paragraph, containing "STRUCTURE_2r9q", creates the "Structure Box" on the page.
<StructureSection load='2r9q' size='340' side='right'caption='[[2r9q]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2r9q]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R9Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R9Q FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r9q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r9q OCA], [https://pdbe.org/2r9q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r9q RCSB], [https://www.ebi.ac.uk/pdbsum/2r9q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r9q ProSAT], [https://www.topsan.org/Proteins/MCSG/2r9q TOPSAN]</span></td></tr>
{{STRUCTURE_2r9q|  PDB=2r9q  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from Agrobacterium tumefaciens===
[https://www.uniprot.org/uniprot/A9CKA1_AGRFC A9CKA1_AGRFC]  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_17982461}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 17982461 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r9/2r9q_consurf.spt"</scriptWhenChecked>
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    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_17982461}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r9q ConSurf].
2R9Q is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R9Q OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
In situ proteolysis for protein crystallization and structure determination., Dong A, Xu X, Edwards AM, Chang C, Chruszcz M, Cuff M, Cymborowski M, Di Leo R, Egorova O, Evdokimova E, Filippova E, Gu J, Guthrie J, Ignatchenko A, Joachimiak A, Klostermann N, Kim Y, Korniyenko Y, Minor W, Que Q, Savchenko A, Skarina T, Tan K, Yakunin A, Yee A, Yim V, Zhang R, Zheng H, Akutsu M, Arrowsmith C, Avvakumov GV, Bochkarev A, Dahlgren LG, Dhe-Paganon S, Dimov S, Dombrovski L, Finerty P Jr, Flodin S, Flores A, Graslund S, Hammerstrom M, Herman MD, Hong BS, Hui R, Johansson I, Liu Y, Nilsson M, Nedyalkova L, Nordlund P, Nyman T, Min J, Ouyang H, Park HW, Qi C, Rabeh W, Shen L, Shen Y, Sukumard D, Tempel W, Tong Y, Tresagues L, Vedadi M, Walker JR, Weigelt J, Welin M, Wu H, Xiao T, Zeng H, Zhu H, Nat Methods. 2007 Dec;4(12):1019-21. Epub 2007 Nov 4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17982461 17982461]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Agrobacterium tumefaciens str. c58]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Dong A]]
[[Category: Dong, A.]]
[[Category: Edwards AM]]
[[Category: Edwards, A M.]]
[[Category: Joachimiak A]]
[[Category: Joachimiak, A.]]
[[Category: Savchenko A]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Xu X]]
[[Category: Savchenko, A.]]
[[Category: Zhang R]]
[[Category: Xu, X.]]
[[Category: Zhang, R.]]
[[Category: 2'-deoxycytidine 5'-triphosphate deaminase]]
[[Category: Hydrolase]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
 
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Retrieved from "https://proteopedia.org/2r9q"