1k9b: Difference between revisions

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New page: left|200px<br /><applet load="1k9b" size="450" color="white" frame="true" align="right" spinBox="true" caption="1k9b, resolution 2.8Å" /> '''Crystal structure of ...
 
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[[Image:1k9b.jpg|left|200px]]<br /><applet load="1k9b" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1k9b, resolution 2.8&Aring;" />
'''Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28 nm resolution. Structural peculiarities in a folded protein conformation'''<br />


==Overview==
==Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28 nm resolution. Structural peculiarities in a folded protein conformation==
The Bowman-Birk inhibitor from soybean is a small protein that contains a, binary arrangement of trypsin-reactive and chymotrypsin-reactive, subdomains. In this report, the crystal structure of this anticarcinogenic, protein has been determined to 0.28-nm resolution by molecular replacement, from crystals grown at neutral pH. The crystal structure differs from a, previously determined NMR structure [Werner, M. H. &amp; Wemmer, D. E. (1992), Biochemistry 31, 999-1010] in the relative orientation of the two, enzyme-insertion loops, in some details of the main chain trace, in the, presence of favourable contacts in the trypsin-insertion loop, and in the, orientation of several amino acid side chains. The proximity of Met27 and, Gln48 in the X-ray structure contradicts the solution structure, in which, these two side chains point away from each other. The significant effect, of a Met27--&gt;Ile replacement on the inhibitory activity of the, chymotrypsin-reactive subdomain agrees with the X-ray structure. Exposed, hydrophobic patches, the presence of charged amino acid residues, and the, presence of water molecules in the protein interior are in contrast to, standard proteins that comprise a hydrophobic core and exposed polar amino, acids.
<StructureSection load='1k9b' size='340' side='right'caption='[[1k9b]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1k9b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K9B FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k9b OCA], [https://pdbe.org/1k9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k9b RCSB], [https://www.ebi.ac.uk/pdbsum/1k9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k9b ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/IBB1_SOYBN IBB1_SOYBN] Inhibitor of trypsin and of chymotrypsin.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k9/1k9b_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k9b ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The Bowman-Birk inhibitor from soybean is a small protein that contains a binary arrangement of trypsin-reactive and chymotrypsin-reactive subdomains. In this report, the crystal structure of this anticarcinogenic protein has been determined to 0.28-nm resolution by molecular replacement from crystals grown at neutral pH. The crystal structure differs from a previously determined NMR structure [Werner, M. H. &amp; Wemmer, D. E. (1992) Biochemistry 31, 999-1010] in the relative orientation of the two enzyme-insertion loops, in some details of the main chain trace, in the presence of favourable contacts in the trypsin-insertion loop, and in the orientation of several amino acid side chains. The proximity of Met27 and Gln48 in the X-ray structure contradicts the solution structure, in which these two side chains point away from each other. The significant effect of a Met27--&gt;Ile replacement on the inhibitory activity of the chymotrypsin-reactive subdomain agrees with the X-ray structure. Exposed hydrophobic patches, the presence of charged amino acid residues, and the presence of water molecules in the protein interior are in contrast to standard proteins that comprise a hydrophobic core and exposed polar amino acids.


==About this Structure==
Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28-nm resolution. Structural peculiarities in a folded protein conformation.,Voss RH, Ermler U, Essen LO, Wenzl G, Kim YM, Flecker P Eur J Biochem. 1996 Nov 15;242(1):122-31. PMID:8954162<ref>PMID:8954162</ref>
1K9B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1K9B OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28-nm resolution. Structural peculiarities in a folded protein conformation., Voss RH, Ermler U, Essen LO, Wenzl G, Kim YM, Flecker P, Eur J Biochem. 1996 Nov 15;242(1):122-31. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8954162 8954162]
</div>
<div class="pdbe-citations 1k9b" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Trypsin inhibitor 3D structures|Trypsin inhibitor 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Glycine max]]
[[Category: Glycine max]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Ermler, U.]]
[[Category: Ermler U]]
[[Category: Essen, L.O.]]
[[Category: Essen LO]]
[[Category: Flecker, P.]]
[[Category: Flecker P]]
[[Category: Kim, Y.M.]]
[[Category: Kim YM]]
[[Category: Voss, R.H.]]
[[Category: Voss RH]]
[[Category: Wenzl, G.]]
[[Category: Wenzl G]]
[[Category: double-headed]]
[[Category: tripple-stranded beta hairpin]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 18:58:27 2007''

Latest revision as of 06:53, 30 October 2024

Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28 nm resolution. Structural peculiarities in a folded protein conformation

1k9b, resolution 2.80Å

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