1pdf: Difference between revisions

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{{Seed}}
[[Image:1pdf.png|left|200px]]


<!--
==Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex==
The line below this paragraph, containing "STRUCTURE_1pdf", creates the "Structure Box" on the page.
<SX load='1pdf' size='340' side='right' viewer='molstar' caption='[[1pdf]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pdf]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PDF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdf OCA], [https://pdbe.org/1pdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pdf RCSB], [https://www.ebi.ac.uk/pdbsum/1pdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pdf ProSAT]</span></td></tr>
{{STRUCTURE_1pdf|  PDB=1pdf  |  SCENE=  }}
</table>
 
== Function ==
===Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex===
[https://www.uniprot.org/uniprot/BP11_BPT4 BP11_BPT4] Baseplate protein that is part of the baseplate wedge and that connects the short tail fibers to the baseplate (PubMed:15315755). Involved in the tail assembly.<ref>PMID:15315755</ref> <ref>PMID:21129200</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_12923574}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 12923574 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdf_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_12923574}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pdf ConSurf].
1PDF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDF OCA].  
<div style="clear:both"></div>
 
== References ==
==Reference==
<references/>
Three-dimensional structure of bacteriophage T4 baseplate., Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG, Nat Struct Biol. 2003 Sep;10(9):688-93. Epub 2003 Aug 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12923574 12923574]
__TOC__
[[Category: Enterobacteria phage t4]]
</SX>
[[Category: Single protein]]
[[Category: Escherichia virus T4]]
[[Category: Arisaka, F.]]
[[Category: Large Structures]]
[[Category: Chipman, P R.]]
[[Category: Arisaka F]]
[[Category: Kanamaru, S.]]
[[Category: Chipman PR]]
[[Category: Kostyuchenko, V A.]]
[[Category: Kanamaru S]]
[[Category: Leiman, P G.]]
[[Category: Kostyuchenko VA]]
[[Category: Mesyanzhinov, V V.]]
[[Category: Leiman PG]]
[[Category: Raaij, M J.van.]]
[[Category: Mesyanzhinov VV]]
[[Category: Rossmann, M G.]]
[[Category: Rossmann MG]]
[[Category: Structural protein]]
[[Category: Van Raaij MJ]]
 
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