1nly: Difference between revisions

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{{Seed}}
[[Image:1nly.png|left|200px]]


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==Crystal structure of the traffic ATPase of the Helicobacter pylori type IV secretion system in complex with ATPgammaS==
The line below this paragraph, containing "STRUCTURE_1nly", creates the "Structure Box" on the page.
<StructureSection load='1nly' size='340' side='right'caption='[[1nly]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1nly]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NLY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NLY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1nly|  PDB=1nly  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nly OCA], [https://pdbe.org/1nly PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nly RCSB], [https://www.ebi.ac.uk/pdbsum/1nly PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nly ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the traffic ATPase of the Helicobacter pylori type IV secretion system in complex with ATPgammaS===
== Function ==
 
[https://www.uniprot.org/uniprot/Q7BK04_HELPX Q7BK04_HELPX]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12727865}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 12727865 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nl/1nly_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12727865}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1NLY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NLY OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nly ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
VirB11 ATPases are dynamic hexameric assemblies: new insights into bacterial type IV secretion., Savvides SN, Yeo HJ, Beck MR, Blaesing F, Lurz R, Lanka E, Buhrdorf R, Fischer W, Haas R, Waksman G, EMBO J. 2003 May 1;22(9):1969-80. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12727865 12727865]
</StructureSection>
[[Category: Helicobacter pylori 26695]]
[[Category: Helicobacter pylori 26695]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Beck, M R.]]
[[Category: Beck MR]]
[[Category: Blaesing, F.]]
[[Category: Blaesing F]]
[[Category: Buhrdorf, R.]]
[[Category: Buhrdorf R]]
[[Category: Fischer, W.]]
[[Category: Fischer W]]
[[Category: Haas, R.]]
[[Category: Haas R]]
[[Category: Lanka, E.]]
[[Category: Lanka E]]
[[Category: Lurz, R.]]
[[Category: Lurz R]]
[[Category: Savvides, S N.]]
[[Category: Savvides SN]]
[[Category: Waksman, G.]]
[[Category: Waksman G]]
[[Category: Yeo, H J.]]
[[Category: Yeo HJ]]
[[Category: Atpgamma]]
[[Category: Bacterial type iv secretion]]
[[Category: Helicobacter pylori]]
[[Category: Hp0525]]
[[Category: Virb11 atpase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 16:51:57 2008''
Retrieved from "https://proteopedia.org/1nly"