1oxc: Difference between revisions

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{{Seed}}
[[Image:1oxc.png|left|200px]]


<!--
==LecB (PA-LII) in complex with FUCOSE==
The line below this paragraph, containing "STRUCTURE_1oxc", creates the "Structure Box" on the page.
<StructureSection load='1oxc' size='340' side='right'caption='[[1oxc]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1oxc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXC FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1oxc|  PDB=1oxc  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxc OCA], [https://pdbe.org/1oxc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxc RCSB], [https://www.ebi.ac.uk/pdbsum/1oxc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxc ProSAT]</span></td></tr>
 
</table>
===LecB (PA-LII) in complex with FUCOSE===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9HYN5_PSEAE Q9HYN5_PSEAE]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12909014}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 12909014 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxc_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12909014}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1OXC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXC OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oxc ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structural basis of carbohydrate recognition by the lectin LecB from Pseudomonas aeruginosa., Loris R, Tielker D, Jaeger KE, Wyns L, J Mol Biol. 2003 Aug 22;331(4):861-70. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12909014 12909014]
</StructureSection>
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Single protein]]
[[Category: Jaeger K-E]]
[[Category: Jaeger, K E.]]
[[Category: Loris R]]
[[Category: Loris, R.]]
[[Category: Tielker D]]
[[Category: Tielker, D.]]
[[Category: Wyns L]]
[[Category: Wyns, L.]]
[[Category: Carbohydrate]]
[[Category: Lectin]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 17:03:37 2008''

Latest revision as of 13:28, 13 March 2024

LecB (PA-LII) in complex with FUCOSE

1oxc, resolution 1.20Å

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