Template:STRUCTURE 2obd: Difference between revisions

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{{StructureD
{{Structure
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|2obd, resolution 2.10&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2obd]], [[Resolution|resolution]] 2.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
|LIGAND= <scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=2OB:CHOLESTERYL+OLEATE'>2OB</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=PCW:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PCW</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>
|LIGAND= <scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=2OB:CHOLESTERYL+OLEATE'>2OB</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=PCW:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PCW</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=FU4:2,6-ANHYDRO-1-DEOXY-D-GALACTITOL'>FU4</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>
|GENE= CETP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
|GENE= CETP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00026 BPI2], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00025 BPI1]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2obd RCSB], [http://www.ebi.ac.uk/pdbsum/2obd PDBsum]</span>
|NONSTDRES=<scene name='pdbligand=FU4:2,6-ANHYDRO-1-DEOXY-D-GALACTITOL'>FU4</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obd OCA], [http://www.ebi.ac.uk/pdbsum/2obd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2obd RCSB]</span>
|FUNCTION={{GO|id=GO:0008289 | text = lipid binding}}
|FUNCTION={{GO|id=GO:0008289 | text = lipid binding}}
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001124 Ipr001124]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF02886 PF02886], [http://pfam.sanger.ac.uk/family?acc=PF01273 PF01273]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q53YZ1 Q53YZ1]</span>
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001124 Ipr001124]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF02886 PF02886], [http://pfam.sanger.ac.uk/family?acc=PF01273 PF01273]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q53YZ1 Q53YZ1]</span>
|uPDB=2OBD|CONSURF={{!}}-
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
{{!}} '''Toggle Conservation Colors:'''
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
Rows = identical sequences:
<jmol>
<jmolButton>
<script></script>
<text>A [x]</text>
<name>jmb_2obd_A</name>
<title>toggle chain A</title>
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
</jmolButton>
</jmol>
}}
}}

Latest revision as of 14:23, 7 January 2013

Drag the structure with the mouse to rotate
2obd, resolution 2.10Å (default scene)
Ligands: 1PE, 2OB, CL, EPE, PCW, PG4, FU4, NDG
Gene: CETP (Homo sapiens)
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


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