2ip6: Difference between revisions

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{{Seed}}
[[Image:2ip6.png|left|200px]]


<!--
==Crystal structure of PedB==
The line below this paragraph, containing "STRUCTURE_2ip6", creates the "Structure Box" on the page.
<StructureSection load='2ip6' size='340' side='right'caption='[[2ip6]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2ip6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pediococcus_pentosaceus Pediococcus pentosaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IP6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IP6 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2ip6|  PDB=2ip6  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ip6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ip6 OCA], [https://pdbe.org/2ip6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ip6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ip6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ip6 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of PedB===
== Function ==
 
[https://www.uniprot.org/uniprot/Q79IK2_PEDPE Q79IK2_PEDPE]  
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_17537233}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 17537233 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ip/2ip6_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_17537233}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2IP6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pediococcus_pentosaceus Pediococcus pentosaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IP6 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ip6 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
High resolution crystal structure of PedB: a structural basis for the classification of pediocin-like immunity proteins., Kim IK, Kim MK, Kim JH, Yim HS, Cha SS, Kang SO, BMC Struct Biol. 2007 May 30;7:35. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17537233 17537233]
</StructureSection>
 
[[Category: Large Structures]]
Crystallization and preliminary X-ray crystallographic analysis of the pediocin immunity protein (PedB) from Pediococcus pentosaceus at 1.35 A resolution., Kim IK, Kim MK, Yim HS, Cha SS, Kang SO, Biochim Biophys Acta. 2005 Aug 10;1751(2):205-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16019271 16019271]
[[Category: Pediococcus pentosaceus]]
[[Category: Pediococcus pentosaceus]]
[[Category: Single protein]]
[[Category: Cha SS]]
[[Category: Cha, S S.]]
[[Category: Kang SO]]
[[Category: Kang, S O.]]
[[Category: Kim IK]]
[[Category: Kim, I K.]]
[[Category: Kim JH]]
[[Category: Kim, J H.]]
[[Category: Kim MK]]
[[Category: Kim, M K.]]
[[Category: Yim HS]]
[[Category: Yim, H S.]]
[[Category: Antimicrobial protein]]
[[Category: Immunity protein to the pediocin pp-1]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 18:46:09 2008''

Latest revision as of 13:53, 13 March 2024

Crystal structure of PedB

2ip6, resolution 1.35Å

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