2f2g: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2f2g.png|left|200px]]


<!--
==X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990==
The line below this paragraph, containing "STRUCTURE_2f2g", creates the "Structure Box" on the page.
<StructureSection load='2f2g' size='340' side='right'caption='[[2f2g]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2f2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q4m 1q4m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F2G FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HMH:4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE'>HMH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2f2g|  PDB=2f2g  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">At3g16990 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f2g OCA], [https://pdbe.org/2f2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f2g RCSB], [https://www.ebi.ac.uk/pdbsum/2f2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f2g ProSAT], [https://www.topsan.org/Proteins/CESG/2f2g TOPSAN]</span></td></tr>
===X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2F2G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q4m 1q4m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA].  
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/2f2g_consurf.spt"</scriptWhenChecked>
==Reference==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
Crystal structure of gene locus At3g16990 from Arabidopsis thaliana., Blommel PG, Smith DW, Bingman CA, Dyer DH, Rayment I, Holden HM, Fox BG, Phillips GN Jr, Proteins. 2004 Oct 1;57(1):221-2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15326608 15326608]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Arabidopsis thaliana]]
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f2g ConSurf].
[[Category: Bingman, C A.]]
<div style="clear:both"></div>
[[Category: Bitto, E.]]
__TOC__
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
</StructureSection>
[[Category: Johnson, K A.]]
[[Category: Arath]]
[[Category: Jr., G N.Phillips.]]
[[Category: Large Structures]]
[[Category: Smith, D W.]]
[[Category: Bingman, C A]]
[[Category: Wesenberg, G W.]]
[[Category: Bitto, E]]
[[Category: Structural genomic]]
[[Category: Johnson, K A]]
[[Category: Phillips, G N]]
[[Category: Smith, D W]]
[[Category: Wesenberg, G W]]
[[Category: At3g16990]]
[[Category: At3g16990]]
[[Category: Center for eukaryotic structural genomic]]
[[Category: Center foreukaryotic structural genomic]]
[[Category: Cesg]]
[[Category: Cesg]]
[[Category: Plant protein]]
[[Category: Plant protein]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: Tena/thi-4/pqqc family]]
[[Category: Tena/thi-4/pqqc family]]
[[Category: Tena_thi-4 domain]]
[[Category: Tena_thi-4 domain]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 22:14:02 2008''
Retrieved from "https://proteopedia.org/2f2g"