1wmd: Difference between revisions

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{{Seed}}
[[Image:1wmd.png|left|200px]]


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==Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)==
The line below this paragraph, containing "STRUCTURE_1wmd", creates the "Structure Box" on the page.
<StructureSection load='1wmd' size='340' side='right'caption='[[1wmd]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1wmd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._KSM-KP43 Bacillus sp. KSM-KP43]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WMD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1wmd|  PDB=1wmd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wmd OCA], [https://pdbe.org/1wmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wmd RCSB], [https://www.ebi.ac.uk/pdbsum/1wmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wmd ProSAT]</span></td></tr>
 
</table>
===Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)===
== Function ==
 
[https://www.uniprot.org/uniprot/Q93UV9_9BACI Q93UV9_9BACI]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_15342641}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15342641 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wm/1wmd_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15342641}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1WMD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WMD OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wmd ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
The crystal structure of an oxidatively stable subtilisin-like alkaline serine protease, KP-43, with a C-terminal beta-barrel domain., Nonaka T, Fujihashi M, Kita A, Saeki K, Ito S, Horikoshi K, Miki K, J Biol Chem. 2004 Nov 5;279(45):47344-51. Epub 2004 Sep 1. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15342641 15342641]
</StructureSection>
 
[[Category: Bacillus sp. KSM-KP43]]
Crystallization and preliminary X-ray diffraction studies of a novel alkaline serine protease (KP-43) from alkaliphilic Bacillus sp. strain KSM-KP43., Nonaka T, Fujihashi M, Kita A, Saeki K, Ito S, Miki K, Acta Crystallogr D Biol Crystallogr. 2001 May;57(Pt 5):717-8. Epub 2001, Apr 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11320315 11320315]
[[Category: Large Structures]]
[[Category: Bacteria]]
[[Category: Fujihashi M]]
[[Category: Single protein]]
[[Category: Horikoshi K]]
[[Category: Fujihashi, M.]]
[[Category: Ito S]]
[[Category: Horikoshi, K.]]
[[Category: Kita A]]
[[Category: Ito, S.]]
[[Category: Miki K]]
[[Category: Kita, A.]]
[[Category: Nonaka T]]
[[Category: Miki, K.]]
[[Category: Saeki K]]
[[Category: Nonaka, T.]]
[[Category: Saeki, K.]]
[[Category: Alpha-beta hydrolase fold]]
[[Category: Jelly-roll beta-barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:31:07 2008''
Retrieved from "https://proteopedia.org/1wmd"