1pja: Difference between revisions

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{{Seed}}
[[Image:1pja.png|left|200px]]


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==The crystal structure of palmitoyl protein thioesterase-2 reveals the basis for divergent substrate specificities of the two lysosomal thioesterases (PPT1 and PPT2)==
The line below this paragraph, containing "STRUCTURE_1pja", creates the "Structure Box" on the page.
<StructureSection load='1pja' size='340' side='right'caption='[[1pja]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pja]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PJA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PJA FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
{{STRUCTURE_1pja| PDB=1pja |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pja FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pja OCA], [https://pdbe.org/1pja PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pja RCSB], [https://www.ebi.ac.uk/pdbsum/1pja PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pja ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PPT2_HUMAN PPT2_HUMAN] Removes thioester-linked fatty acyl groups from various substrates including S-palmitoyl-CoA. Has the highest S-thioesterase activity for the acyl groups palmitic and myristic acid followed by other short- and long-chain acyl substrates. However, because of structural constraints, is unable to remove palmitate from peptides or proteins.<ref>PMID:9341199</ref> <ref>PMID:10417332</ref> <ref>PMID:12855696</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pj/1pja_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pja ConSurf].
<div style="clear:both"></div>


===The crystal structure of palmitoyl protein thioesterase-2 reveals the basis for divergent substrate specificities of the two lysosomal thioesterases (PPT1 and PPT2)===
==See Also==
 
*[[Thioesterase 3D structures|Thioesterase 3D structures]]
 
== References ==
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(as it appears on PubMed at http://www.pubmed.gov), where 12855696 is the PubMed ID number.
</StructureSection>
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{{ABSTRACT_PUBMED_12855696}}
 
==About this Structure==
1PJA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PJA OCA].
 
==Reference==
The crystal structure of palmitoyl protein thioesterase-2 (PPT2) reveals the basis for divergent substrate specificities of the two lysosomal thioesterases, PPT1 and PPT2., Calero G, Gupta P, Nonato MC, Tandel S, Biehl ER, Hofmann SL, Clardy J, J Biol Chem. 2003 Sep 26;278(39):37957-64. Epub 2003 Jul 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12855696 12855696]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Palmitoyl-protein hydrolase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Biehl ER]]
[[Category: Biehl, E R.]]
[[Category: Calero G]]
[[Category: Calero, G.]]
[[Category: Clardy J]]
[[Category: Clardy, J.]]
[[Category: Gupta P]]
[[Category: Gupta, P.]]
[[Category: Hofmann SL]]
[[Category: Hofmann, S L.]]
[[Category: Nonato MC]]
[[Category: Nonato, M C.]]
[[Category: Tandel S]]
[[Category: Tandel, S.]]
[[Category: Glycoprotein]]
[[Category: Hydrolase]]
[[Category: Lysosome]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:52:18 2008''

Latest revision as of 05:56, 17 April 2024

The crystal structure of palmitoyl protein thioesterase-2 reveals the basis for divergent substrate specificities of the two lysosomal thioesterases (PPT1 and PPT2)

1pja, resolution 2.70Å

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