2dri: Difference between revisions

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{{Seed}}
[[Image:2dri.png|left|200px]]


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==PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS==
The line below this paragraph, containing "STRUCTURE_2dri", creates the "Structure Box" on the page.
<StructureSection load='2dri' size='340' side='right'caption='[[2dri]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dri]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1dri 1dri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DRI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DRI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
{{STRUCTURE_2dri| PDB=2dri |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dri OCA], [https://pdbe.org/2dri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dri RCSB], [https://www.ebi.ac.uk/pdbsum/2dri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dri ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RBSB_ECOLI RBSB_ECOLI] Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/2dri_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dri ConSurf].
<div style="clear:both"></div>


===PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS===
==See Also==
 
*[[Ribose-binding protein|Ribose-binding protein]]
 
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 7982928 is the PubMed ID number.
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{{ABSTRACT_PUBMED_7982928}}
 
==About this Structure==
2DRI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1dri 1dri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DRI OCA].
 
==Reference==
Probing protein-protein interactions. The ribose-binding protein in bacterial transport and chemotaxis., Bjorkman AJ, Binnie RA, Zhang H, Cole LB, Hermodson MA, Mowbray SL, J Biol Chem. 1994 Dec 2;269(48):30206-11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7982928 7982928]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Cole, L B.]]
[[Category: Cole LB]]
[[Category: Mowbray, S L.]]
[[Category: Mowbray SL]]
[[Category: Sugar transport]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 02:02:48 2008''
Retrieved from "https://proteopedia.org/2dri"