2okx: Difference between revisions

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{{Seed}}
[[Image:2okx.png|left|200px]]


<!--
==Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A==
The line below this paragraph, containing "STRUCTURE_2okx", creates the "Structure Box" on the page.
<StructureSection load='2okx' size='340' side='right'caption='[[2okx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2okx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._GL1 Bacillus sp. GL1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OKX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
{{STRUCTURE_2okx|  PDB=2okx  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2okx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2okx OCA], [https://pdbe.org/2okx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2okx RCSB], [https://www.ebi.ac.uk/pdbsum/2okx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2okx ProSAT]</span></td></tr>
 
</table>
===Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A===
== Function ==
 
[https://www.uniprot.org/uniprot/Q93RE7_BACGL Q93RE7_BACGL]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_17936784}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 17936784 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/2okx_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_17936784}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2OKX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKX OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2okx ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Crystal structure of glycoside hydrolase family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1., Cui Z, Maruyama Y, Mikami B, Hashimoto W, Murata K, J Mol Biol. 2007 Nov 23;374(2):384-98. Epub 2007 Sep 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17936784 17936784]
</StructureSection>
[[Category: Alpha-L-rhamnosidase]]
[[Category: Bacillus sp. GL1]]
[[Category: Bacillus sp.]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Cui Z]]
[[Category: Cui, Z.]]
[[Category: Hashimoto W]]
[[Category: Hashimoto, W.]]
[[Category: Mikami B]]
[[Category: Mikami, B.]]
[[Category: Murata K]]
[[Category: Murata, K.]]
[[Category: Alpha barrel]]
[[Category: Glycoside hydrolase family 78]]
[[Category: Invertase]]
[[Category: Rhamnosidase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 02:09:49 2008''

Latest revision as of 06:29, 3 April 2024

Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A

2okx, resolution 1.90Å

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