1sf0: Difference between revisions

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{{Seed}}
[[Image:1sf0.png|left|200px]]


<!--
==BACKBONE SOLUTION STRUCTURE OF MIXED ALPHA/BETA PROTEIN PF1061==
The line below this paragraph, containing "STRUCTURE_1sf0", creates the "Structure Box" on the page.
<StructureSection load='1sf0' size='340' side='right'caption='[[1sf0]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1sf0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SF0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SF0 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sf0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sf0 OCA], [https://pdbe.org/1sf0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sf0 RCSB], [https://www.ebi.ac.uk/pdbsum/1sf0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sf0 ProSAT], [https://www.topsan.org/Proteins/SECSG/1sf0 TOPSAN]</span></td></tr>
{{STRUCTURE_1sf0|  PDB=1sf0  |  SCENE=  }}
</table>
 
== Function ==
===BACKBONE SOLUTION STRUCTURE OF MIXED ALPHA/BETA PROTEIN PF1061===
[https://www.uniprot.org/uniprot/SAMP2_PYRFU SAMP2_PYRFU] Functions as a protein modifier covalently attached to lysine residues of substrate proteins, as well as a sulfur carrier in tRNA thiolation. The protein modification process is termed sampylation and involves the formation of an isopeptide bond between the SAMP2 C-terminal glycine carboxylate and the epsilon-amino group of lysine residues on target proteins. Is able to form polymeric chains with itself likely at Lys-55, similar to ubiquitin and other ubiquitin-like proteins. May serve as a proteolytic signal in the cell to target proteins for degradation by proteasomes.[UniProtKB:D4GZE7]<ref>PMID:15704012</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_15704012}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 15704012 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sf/1sf0_consurf.spt"</scriptWhenChecked>
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    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_15704012}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sf0 ConSurf].
1SF0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SF0 OCA].  
<div style="clear:both"></div>
 
== References ==
==Reference==
<references/>
Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target., Valafar H, Mayer KL, Bougault CM, LeBlond PD, Jenney FE Jr, Brereton PS, Adams MW, Prestegard JH, J Struct Funct Genomics. 2004;5(4):241-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15704012 15704012]
__TOC__
[[Category: Pyrococcus furiosus dsm 3638]]
</StructureSection>
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Mayer, K L.]]
[[Category: Pyrococcus furiosus DSM 3638]]
[[Category: Prestegard, J H.]]
[[Category: Mayer KL]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Prestegard JH]]
[[Category: Valafar, H.]]
[[Category: Valafar H]]
[[Category: Nmr]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Residual dipolar coupling]]
[[Category: Secsg]]
[[Category: Southeast collaboratory for structural genomic]]
[[Category: Structural genomic]]
 
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Retrieved from "https://proteopedia.org/1sf0"