1xeo: Difference between revisions

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{{Seed}}
[[Image:1xeo.png|left|200px]]


<!--
==High Resolution Crystals Structure of Cobalt- Peptide Deformylase Bound To Formate==
The line below this paragraph, containing "STRUCTURE_1xeo", creates the "Structure Box" on the page.
<StructureSection load='1xeo' size='340' side='right'caption='[[1xeo]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1xeo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XEO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XEO FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
{{STRUCTURE_1xeo|  PDB=1xeo  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xeo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xeo OCA], [https://pdbe.org/1xeo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xeo RCSB], [https://www.ebi.ac.uk/pdbsum/1xeo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xeo ProSAT]</span></td></tr>
 
</table>
===High Resolution Crystals Structure of Cobalt- Peptide Deformylase Bound To Formate===
== Function ==
 
[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_15796505}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15796505 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/1xeo_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15796505}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1XEO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XEO OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xeo ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal., Jain R, Hao B, Liu RP, Chan MK, J Am Chem Soc. 2005 Apr 6;127(13):4558-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15796505 15796505]
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Peptide deformylase]]
[[Category: Chan MK]]
[[Category: Single protein]]
[[Category: Hao B]]
[[Category: Chan, M K.]]
[[Category: Jain R]]
[[Category: Hao, B.]]
[[Category: Liu R-P]]
[[Category: Jain, R.]]
[[Category: Liu, R P.]]
[[Category: Cobalt deformylase]]
[[Category: Formate]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 04:22:49 2008''

Latest revision as of 08:49, 14 February 2024

High Resolution Crystals Structure of Cobalt- Peptide Deformylase Bound To Formate

1xeo, resolution 1.30Å

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