2cvf: Difference between revisions

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{{Seed}}
[[Image:2cvf.png|left|200px]]


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==Crystal structure of the RadB recombinase==
The line below this paragraph, containing "STRUCTURE_2cvf", creates the "Structure Box" on the page.
<StructureSection load='2cvf' size='340' side='right'caption='[[2cvf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2cvf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CVF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cvf OCA], [https://pdbe.org/2cvf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cvf RCSB], [https://www.ebi.ac.uk/pdbsum/2cvf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cvf ProSAT]</span></td></tr>
{{STRUCTURE_2cvf| PDB=2cvf |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RADB_THEKO RADB_THEKO] Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cv/2cvf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cvf ConSurf].
<div style="clear:both"></div>


===Crystal structure of the RadB recombinase===
==See Also==
 
*[[Resolvase 3D structures|Resolvase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_15956102}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 15956102 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_15956102}}
 
==About this Structure==
2CVF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVF OCA].
 
==Reference==
Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly., Akiba T, Ishii N, Rashid N, Morikawa M, Imanaka T, Harata K, Nucleic Acids Res. 2005 Jun 13;33(10):3412-23. Print 2005. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15956102 15956102]
[[Category: Single protein]]
[[Category: Thermococcus kodakarensis]]
[[Category: Thermococcus kodakarensis]]
[[Category: Akiba, T.]]
[[Category: Akiba T]]
[[Category: Harata, K.]]
[[Category: Harata K]]
[[Category: Imanaka, T.]]
[[Category: Imanaka T]]
[[Category: Ishii, N.]]
[[Category: Ishii N]]
[[Category: Morikawa, M.]]
[[Category: Morikawa M]]
[[Category: Rashid, N.]]
[[Category: Rashid N]]
[[Category: Atpase domain]]
[[Category: Filament formation]]
[[Category: Homologous recombination]]
[[Category: Hyperthermophile]]
[[Category: Radb]]
 
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Retrieved from "https://proteopedia.org/2cvf"