2hhc: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2hhc.png|left|200px]]


<!--
==Crystal structure of fucosyltransferase NodZ from Bradyrhizobium==
The line below this paragraph, containing "STRUCTURE_2hhc", creates the "Structure Box" on the page.
<StructureSection load='2hhc' size='340' side='right'caption='[[2hhc]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2hhc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_sp._WM9 Bradyrhizobium sp. WM9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HHC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HHC FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.54&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
{{STRUCTURE_2hhc|  PDB=2hhc |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hhc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hhc OCA], [https://pdbe.org/2hhc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hhc RCSB], [https://www.ebi.ac.uk/pdbsum/2hhc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hhc ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9AQ17_BRASW Q9AQ17_BRASW]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hh/2hhc_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hhc ConSurf].
<div style="clear:both"></div>


===Crystal structure of fucosyltransferase NodZ from Bradyrhizobium===
==See Also==
 
*[[NodS|NodS]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_17762900}}, adds the Publication Abstract to the page
[[Category: Bradyrhizobium sp. WM9]]
(as it appears on PubMed at http://www.pubmed.gov), where 17762900 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Brzezinski K]]
{{ABSTRACT_PUBMED_17762900}}
[[Category: Bujacz G]]
 
[[Category: Jaskolski M]]
==About this Structure==
[[Category: Panjikar S]]
2HHC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_sp. Bradyrhizobium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HHC OCA].
[[Category: Stepkowski T]]
 
==Reference==
High-resolution structure of NodZ fucosyltransferase involved in the biosynthesis of the nodulation factor., Brzezinski K, Stepkowski T, Panjikar S, Bujacz G, Jaskolski M, Acta Biochim Pol. 2007;54(3):537-49. Epub 2007 Aug 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17762900 17762900]
 
Cloning, purification, crystallization and preliminary crystallographic studies of Bradyrhizobium fucosyltransferase NodZ., Brzezinski K, Rogozinski B, Stepkowski T, Bujacz G, Jaskolski M, Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):344-6. Epub 2004, Jan 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14747720 14747720]
 
Rhizobium sp. strain NGR234 NodZ protein is a fucosyltransferase., Quesada-Vincens D, Fellay R, Nasim T, Viprey V, Burger U, Prome JC, Broughton WJ, Jabbouri S, J Bacteriol. 1997 Aug;179(16):5087-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9260950 9260950]
 
Bacterial nodulation protein NodZ is a chitin oligosaccharide fucosyltransferase which can also recognize related substrates of animal origin., Quinto C, Wijfjes AH, Bloemberg GV, Blok-Tip L, Lopez-Lara IM, Lugtenberg BJ, Thomas-Oates JE, Spaink HP, Proc Natl Acad Sci U S A. 1997 Apr 29;94(9):4336-41. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9113990 9113990]
[[Category: Bradyrhizobium sp.]]
[[Category: Single protein]]
[[Category: Brzezinski, K.]]
[[Category: Bujacz, G.]]
[[Category: Jaskolski, M.]]
[[Category: Panjikar, S.]]
[[Category: Stepkowski, T.]]
[[Category: Fucosyltransferase]]
[[Category: Glycosyltransferase]]
[[Category: Nodulation]]
[[Category: Nodz]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 09:33:42 2008''
Retrieved from "https://proteopedia.org/2hhc"