1p9p: Difference between revisions

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{{Seed}}
[[Image:1p9p.png|left|200px]]


<!--
==The Crystal Structure of a M1G37 tRNA Methyltransferase, TrmD==
The line below this paragraph, containing "STRUCTURE_1p9p", creates the "Structure Box" on the page.
<StructureSection load='1p9p' size='340' side='right'caption='[[1p9p]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1p9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P9P FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
{{STRUCTURE_1p9p|  PDB=1p9p |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p9p OCA], [https://pdbe.org/1p9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p9p RCSB], [https://www.ebi.ac.uk/pdbsum/1p9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p9p ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TRMD_ECOLI TRMD_ECOLI] Specifically methylates guanosine-37 in various tRNAs.<ref>PMID:14583191</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/1p9p_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p9p ConSurf].
<div style="clear:both"></div>


===The Crystal Structure of a M1G37 tRNA Methyltransferase, TrmD===
==See Also==
 
*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
 
== References ==
<!--
<references/>
The line below this paragraph, {{ABSTRACT_PUBMED_14583191}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 14583191 is the PubMed ID number.
</StructureSection>
-->
[[Category: Escherichia coli K-12]]
{{ABSTRACT_PUBMED_14583191}}
[[Category: Large Structures]]
 
[[Category: Andraos-Selim C]]
==About this Structure==
[[Category: Elkins PA]]
1P9P is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli,_escherichia_coli_o6,_escherichia_coli_o157:h7,_and_shigella_flexneri Escherichia coli, escherichia coli o6, escherichia coli o157:h7, and shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P9P OCA].
[[Category: Holmes WM]]
 
[[Category: Rastinejad F]]
==Reference==
[[Category: Redlak M]]
Insights into catalysis by a knotted TrmD tRNA methyltransferase., Elkins PA, Watts JM, Zalacain M, van Thiel A, Vitazka PR, Redlak M, Andraos-Selim C, Rastinejad F, Holmes WM, J Mol Biol. 2003 Nov 7;333(5):931-49. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14583191 14583191]
[[Category: Van Thiel A]]
[[Category: Escherichia coli, escherichia coli o6, escherichia coli o157:h7, and shigella flexneri]]
[[Category: Vitaszka PR]]
[[Category: Single protein]]
[[Category: Watts JM]]
[[Category: Andraos-Selim, C.]]
[[Category: Zalacain M]]
[[Category: Elkins, P A.]]
[[Category: Holmes, W M.]]
[[Category: Rastinejad, F.]]
[[Category: Redlak, M.]]
[[Category: Thiel, A Van.]]
[[Category: Vitaszka, P R.]]
[[Category: Watts, J M.]]
[[Category: Zalacain, M.]]
[[Category: Adomet]]
[[Category: Knot]]
[[Category: Methyltransferase]]
[[Category: S-adenosylmethionine]]
[[Category: Spou]]
[[Category: Spout]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 12:54:12 2008''
Retrieved from "https://proteopedia.org/1p9p"