1wrd: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1wrd.png|left|200px]]


<!--
==Crystal structure of Tom1 GAT domain in complex with ubiquitin==
The line below this paragraph, containing "STRUCTURE_1wrd", creates the "Structure Box" on the page.
<StructureSection load='1wrd' size='340' side='right'caption='[[1wrd]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1wrd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WRD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wrd OCA], [https://pdbe.org/1wrd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wrd RCSB], [https://www.ebi.ac.uk/pdbsum/1wrd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wrd ProSAT]</span></td></tr>
{{STRUCTURE_1wrd|  PDB=1wrd |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/TOM1_HUMAN TOM1_HUMAN] May be involved in intracellular trafficking. Probable association with membranes.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wr/1wrd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wrd ConSurf].
<div style="clear:both"></div>


===Crystal structure of Tom1 GAT domain in complex with ubiquitin===
==See Also==
 
*[[3D structures of ubiquitin|3D structures of ubiquitin]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_16199040}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 16199040 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_16199040}}
 
==About this Structure==
1WRD is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WRD OCA].
 
==Reference==
Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain., Akutsu M, Kawasaki M, Katoh Y, Shiba T, Yamaguchi Y, Kato R, Kato K, Nakayama K, Wakatsuki S, FEBS Lett. 2005 Oct 10;579(24):5385-91. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16199040 16199040]
[[Category: Bos taurus]]
[[Category: Bos taurus]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Akutsu, M.]]
[[Category: Akutsu M]]
[[Category: Kato, K.]]
[[Category: Kato K]]
[[Category: Kato, R.]]
[[Category: Kato R]]
[[Category: Katoh, Y.]]
[[Category: Katoh Y]]
[[Category: Kawasaki, M.]]
[[Category: Kawasaki M]]
[[Category: Nakayama, K.]]
[[Category: Nakayama K]]
[[Category: Shiba, T.]]
[[Category: Shiba T]]
[[Category: Wakatsuki, S.]]
[[Category: Wakatsuki S]]
[[Category: Yamaguchi, Y.]]
[[Category: Yamaguchi Y]]
[[Category: Three-helix bundle]]
[[Category: Ubiquitin-binding protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 14:16:15 2008''
Retrieved from "https://proteopedia.org/1wrd"