3b6a: Difference between revisions

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{{Seed}}
[[Image:3b6a.png|left|200px]]


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==Crystal structure of the Streptomyces coelicolor TetR family protein ActR in complex with actinorhodin==
The line below this paragraph, containing "STRUCTURE_3b6a", creates the "Structure Box" on the page.
<StructureSection load='3b6a' size='340' side='right'caption='[[3b6a]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3b6a]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B6A FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZCT:2,2-[(1R,1R,3S,3S)-6,6,9,9-TETRAHYDROXY-1,1-DIMETHYL-5,5,10,10-TETRAOXO-3,3,4,4,5,5,10,10-OCTAHYDRO-1H,1H-8,8-BIBENZO[G]ISOCHROMENE-3,3-DIYL]DIACETIC+ACID'>ZCT</scene></td></tr>
{{STRUCTURE_3b6a|  PDB=3b6a  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b6a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6a OCA], [https://pdbe.org/3b6a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b6a RCSB], [https://www.ebi.ac.uk/pdbsum/3b6a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b6a ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q53901_STRCH Q53901_STRCH]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b6/3b6a_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b6a ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Actinorhodin, an antibiotic produced by Streptomyces coelicolor, is exported from the cell by the ActA efflux pump. actA is divergently transcribed from actR, which encodes a TetR-like transcriptional repressor. We showed previously that ActR represses transcription by binding to an operator from the actA/actR intergenic region. Importantly, actinorhodin itself or various actinorhodin biosynthetic intermediates can cause ActR to dissociate from its operator, leading to derepression. This suggests that ActR may mediate timely self-resistance to an endogenously produced antibiotic by responding to one of its biosynthetic precursors. Here, we report the structural basis for this precursor-mediated derepression with crystal structures of homodimeric ActR by itself and in complex with either actinorhodin or the actinorhodin biosynthetic intermediate (S)-DNPA [4-dihydro-9-hydroxy-1-methyl-10-oxo-3-H-naphtho-[2,3-c]-pyran-3-(S)-aceti c acid]. The ligand-binding tunnel in each ActR monomer has a striking hydrophilic/hydrophobic/hydrophilic arrangement of surface residues that accommodate either one hexacyclic actinorhodin molecule or two back-to-back tricyclic (S)-DNPA molecules. Moreover, our work also reveals the strongest structural evidence to date that TetR-mediated antibiotic resistance may have been acquired from an antibiotic-producer organism.


===Crystal structure of the Streptomyces coelicolor TetR family protein ActR in complex with actinorhodin===
Crystal structures of the Streptomyces coelicolor TetR-like protein ActR alone and in complex with actinorhodin or the actinorhodin biosynthetic precursor (S)-DNPA.,Willems AR, Tahlan K, Taguchi T, Zhang K, Lee ZZ, Ichinose K, Junop MS, Nodwell JR J Mol Biol. 2008 Mar 7;376(5):1377-87. Epub 2008 Jan 4. PMID:18207163<ref>PMID:18207163</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3b6a" style="background-color:#fffaf0;"></div>


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==See Also==
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*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 18207163 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_18207163}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
3B6A is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6A OCA].
 
==Reference==
Crystal structures of the Streptomyces coelicolor TetR-like protein ActR alone and in complex with actinorhodin or the actinorhodin biosynthetic precursor (S)-DNPA., Willems AR, Tahlan K, Taguchi T, Zhang K, Lee ZZ, Ichinose K, Junop MS, Nodwell JR, J Mol Biol. 2008 Mar 7;376(5):1377-87. Epub 2008 Jan 4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18207163 18207163]
[[Category: Single protein]]
[[Category: Streptomyces coelicolor]]
[[Category: Streptomyces coelicolor]]
[[Category: Junop, M S.]]
[[Category: Junop MS]]
[[Category: Willems, A R.]]
[[Category: Willems AR]]
[[Category: Actinorhodin]]
[[Category: Dna-binding protein]]
[[Category: Ligand]]
[[Category: Tetr family]]
[[Category: Transcription regulation]]
[[Category: Transcriptional repressor]]
 
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Retrieved from "https://proteopedia.org/3b6a"