2gdi: Difference between revisions

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{{Seed}}
[[Image:2gdi.png|left|200px]]


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==Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate==
The line below this paragraph, containing "STRUCTURE_2gdi", creates the "Structure Box" on the page.
<StructureSection load='2gdi' size='340' side='right'caption='[[2gdi]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2gdi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GDI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
{{STRUCTURE_2gdi|  PDB=2gdi |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gdi OCA], [https://pdbe.org/2gdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gdi RCSB], [https://www.ebi.ac.uk/pdbsum/2gdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gdi ProSAT]</span></td></tr>
</table>


===Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate===
==See Also==
 
*[[Riboswitch 3D structures|Riboswitch 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_16728979}}, adds the Publication Abstract to the page
[[Category: Escherichia coli]]
(as it appears on PubMed at http://www.pubmed.gov), where 16728979 is the PubMed ID number.
[[Category: Large Structures]]
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[[Category: Serganov A]]
{{ABSTRACT_PUBMED_16728979}}
 
==About this Structure==
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GDI OCA].
 
==Reference==
Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch., Serganov A, Polonskaia A, Phan AT, Breaker RR, Patel DJ, Nature. 2006 Jun 29;441(7097):1167-71. Epub 2006 May 21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16728979 16728979]
[[Category: Serganov, A.]]
[[Category: Riboswitch]]
[[Category: Thiamine pyrophosphate]]
 
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Retrieved from "https://proteopedia.org/2gdi"