1sdy: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1sdy.png|left|200px]]


<!--
==STRUCTURE SOLUTION AND MOLECULAR DYNAMICS REFINEMENT OF THE YEAST CU,ZN ENZYME SUPEROXIDE DISMUTASE==
The line below this paragraph, containing "STRUCTURE_1sdy", creates the "Structure Box" on the page.
<StructureSection load='1sdy' size='340' side='right'caption='[[1sdy]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1sdy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SDY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1sdy| PDB=1sdy |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sdy OCA], [https://pdbe.org/1sdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sdy RCSB], [https://www.ebi.ac.uk/pdbsum/1sdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sdy ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/SODC_YEAST SODC_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sd/1sdy_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sdy ConSurf].
<div style="clear:both"></div>


===STRUCTURE SOLUTION AND MOLECULAR DYNAMICS REFINEMENT OF THE YEAST CU,ZN ENZYME SUPEROXIDE DISMUTASE===
==See Also==
 
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_1772629}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 1772629 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_1772629}}
 
==About this Structure==
1SDY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDY OCA].
 
==Reference==
Structure solution and molecular dynamics refinement of the yeast Cu,Zn enzyme superoxide dismutase., Djinovic K, Gatti G, Coda A, Antolini L, Pelosi G, Desideri A, Falconi M, Marmocchi F, Rolilio G, Bolognesi M, Acta Crystallogr B. 1991 Dec 1;47 ( Pt 6):918-27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1772629 1772629]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Antolini L]]
[[Category: Superoxide dismutase]]
[[Category: Bolognesi M]]
[[Category: Antolini, L.]]
[[Category: Coda A]]
[[Category: Bolognesi, M.]]
[[Category: Desideri A]]
[[Category: Coda, A.]]
[[Category: Djinovic K]]
[[Category: Desideri, A.]]
[[Category: Falconi M]]
[[Category: Djinovic, K.]]
[[Category: Gatti G]]
[[Category: Falconi, M.]]
[[Category: Marmocchi F]]
[[Category: Gatti, G.]]
[[Category: Pelosi G]]
[[Category: Marmocchi, F.]]
[[Category: Rotilio G]]
[[Category: Pelosi, G.]]
[[Category: Rotilio, G.]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:24:06 2008''
Retrieved from "https://proteopedia.org/1sdy"