2psd: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2psd.png|left|200px]]


<!--
==Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis==
The line below this paragraph, containing "STRUCTURE_2psd", creates the "Structure Box" on the page.
<StructureSection load='2psd' size='340' side='right'caption='[[2psd]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2psd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Renilla_reniformis Renilla reniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PSD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
{{STRUCTURE_2psd|  PDB=2psd |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2psd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2psd OCA], [https://pdbe.org/2psd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2psd RCSB], [https://www.ebi.ac.uk/pdbsum/2psd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2psd ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LUCI_RENRE LUCI_RENRE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/2psd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2psd ConSurf].
<div style="clear:both"></div>


===Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis===
==See Also==
 
*[[Luciferase 3D structures|Luciferase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_17980388}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 17980388 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_17980388}}
 
==About this Structure==
2PSD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Renilla_reniformis Renilla reniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PSD OCA].
 
==Reference==
Crystal structures of the luciferase and green fluorescent protein from Renilla reniformis., Loening AM, Fenn TD, Gambhir SS, J Mol Biol. 2007 Dec 7;374(4):1017-28. Epub 2007 Oct 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17980388 17980388]
[[Category: Renilla reniformis]]
[[Category: Renilla reniformis]]
[[Category: Renilla-luciferin 2-monooxygenase]]
[[Category: Fenn TD]]
[[Category: Single protein]]
[[Category: Gambhir SS]]
[[Category: Fenn, T D.]]
[[Category: Loening AM]]
[[Category: Gambhir, S S.]]
[[Category: Loening, A M.]]
[[Category: Alpha/beta-hydrolase]]
[[Category: Luciferase]]
[[Category: Oxidoreductase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:55:24 2008''