2gb2: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2gb2.png|left|200px]]


<!--
==The P52G mutant of amicyanin in the Cu(II) state.==
The line below this paragraph, containing "STRUCTURE_2gb2", creates the "Structure Box" on the page.
<StructureSection load='2gb2' size='340' side='right'caption='[[2gb2]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2gb2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GB2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GB2 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
{{STRUCTURE_2gb2| PDB=2gb2 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gb2 OCA], [https://pdbe.org/2gb2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gb2 RCSB], [https://www.ebi.ac.uk/pdbsum/2gb2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gb2 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AMCY_PARDE AMCY_PARDE] Primary acceptor of electrons from methylamine dehydrogenase. Passes those electrons on either a soluble cytochrome c or to pseudoazurin.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gb/2gb2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gb2 ConSurf].
<div style="clear:both"></div>


===The P52G mutant of amicyanin in the Cu(II) state.===
==See Also==
 
*[[Amicyanin 3D structures|Amicyanin 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_16819827}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 16819827 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_16819827}}
 
==About this Structure==
2GB2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GB2 OCA].
 
==Reference==
Site-directed mutagenesis of proline 52 to glycine in amicyanin converts a true electron transfer reaction into one that is conformationally gated., Ma JK, Carrell CJ, Mathews FS, Davidson VL, Biochemistry. 2006 Jul 11;45(27):8284-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16819827 16819827]
[[Category: Paracoccus denitrificans]]
[[Category: Paracoccus denitrificans]]
[[Category: Single protein]]
[[Category: Carrell CJ]]
[[Category: Carrell, C J.]]
[[Category: Davidson VL]]
[[Category: Davidson, V L.]]
[[Category: Ma JK]]
[[Category: Ma, J K.]]
[[Category: Mathews FS]]
[[Category: Mathews, F S.]]
[[Category: Beta-sandwich]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 17:35:00 2008''

Latest revision as of 09:27, 14 February 2024

The P52G mutant of amicyanin in the Cu(II) state.

2gb2, resolution 1.25Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=2gb2&oldid=4058650"