1wdp: Difference between revisions

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{{Seed}}
[[Image:1wdp.png|left|200px]]


<!--
==The role of an inner loop in the catalytic mechanism of soybean beta-amylase==
The line below this paragraph, containing "STRUCTURE_1wdp", creates the "Structure Box" on the page.
<StructureSection load='1wdp' size='340' side='right'caption='[[1wdp]], [[Resolution|resolution]] 1.27&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1wdp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WDP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.27&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1wdp|  PDB=1wdp |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wdp OCA], [https://pdbe.org/1wdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wdp RCSB], [https://www.ebi.ac.uk/pdbsum/1wdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wdp ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AMYB_SOYBN AMYB_SOYBN]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/1wdp_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wdp ConSurf].
<div style="clear:both"></div>


===The role of an inner loop in the catalytic mechanism of soybean beta-amylase===
==See Also==
 
*[[Amylase 3D structures|Amylase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_15794648}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 15794648 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_15794648}}
 
==About this Structure==
1WDP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDP OCA].
 
==Reference==
Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism., Kang YN, Tanabe A, Adachi M, Utsumi S, Mikami B, Biochemistry. 2005 Apr 5;44(13):5106-16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15794648 15794648]
[[Category: Beta-amylase]]
[[Category: Glycine max]]
[[Category: Glycine max]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Adachi, M.]]
[[Category: Adachi M]]
[[Category: Kang, Y N.]]
[[Category: Kang YN]]
[[Category: Mikami, B.]]
[[Category: Mikami B]]
[[Category: Utsumi, S.]]
[[Category: Utsumi S]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 17:39:49 2008''

Latest revision as of 13:31, 13 March 2024

The role of an inner loop in the catalytic mechanism of soybean beta-amylase

1wdp, resolution 1.27Å

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