2dd4: Difference between revisions

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{{Seed}}
[[Image:2dd4.png|left|200px]]


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==Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus recombinant apo-enzyme==
The line below this paragraph, containing "STRUCTURE_2dd4", creates the "Structure Box" on the page.
<StructureSection load='2dd4' size='340' side='right'caption='[[2dd4]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dd4]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Thiobacillus_thioparus Thiobacillus thioparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DD4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
{{STRUCTURE_2dd4|  PDB=2dd4  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dd4 OCA], [https://pdbe.org/2dd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dd4 RCSB], [https://www.ebi.ac.uk/pdbsum/2dd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dd4 ProSAT]</span></td></tr>
 
</table>
===Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus recombinant apo-enzyme===
== Function ==
 
[https://www.uniprot.org/uniprot/SCNA_THITI SCNA_THITI] Involved in the degradation of thiocyanate.
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_17222425}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 17222425 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/2dd4_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_17222425}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2DD4 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Thiobacillus_thioparus Thiobacillus thioparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD4 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dd4 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center., Arakawa T, Kawano Y, Kataoka S, Katayama Y, Kamiya N, Yohda M, Odaka M, J Mol Biol. 2007 Mar 9;366(5):1497-509. Epub 2006 Dec 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17222425 17222425]
</StructureSection>
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Thiobacillus thioparus]]
[[Category: Thiobacillus thioparus]]
[[Category: Thiocyanate hydrolase]]
[[Category: Arakawa T]]
[[Category: Arakawa, T.]]
[[Category: Kamiya N]]
[[Category: Kamiya, N.]]
[[Category: Kataoka S]]
[[Category: Kataoka, S.]]
[[Category: Katayama Y]]
[[Category: Katayama, Y.]]
[[Category: Kawano Y]]
[[Category: Kawano, Y.]]
[[Category: Odaka M]]
[[Category: Odaka, M.]]
[[Category: Yohda M]]
[[Category: Yohda, M.]]
[[Category: Carbonyl sulfide]]
[[Category: Claw setting]]
[[Category: Cobalt]]
[[Category: Complex]]
[[Category: Enzyme]]
[[Category: Hydrolase]]
[[Category: Metalloprotein]]
[[Category: Model complex]]
[[Category: Nitrile hydratase]]
[[Category: Non-corrin]]
[[Category: Protein]]
[[Category: Sulfenic acid]]
[[Category: Sulfinic acid]]
[[Category: Thiocyanate]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 17:41:12 2008''
Retrieved from "https://proteopedia.org/2dd4"