2k3s: Difference between revisions

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{{Seed}}
[[Image:2k3s.png|left|200px]]


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==HADDOCK-derived structure of the CH-domain of the smoothelin-like 1 complexed with the C-domain of apocalmodulin==
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<StructureSection load='2k3s' size='340' side='right'caption='[[2k3s]]' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2k3s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K3S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K3S FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k3s OCA], [https://pdbe.org/2k3s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k3s RCSB], [https://www.ebi.ac.uk/pdbsum/2k3s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k3s ProSAT]</span></td></tr>
{{STRUCTURE_2k3s|  PDB=2k3s  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/SMTL1_MOUSE SMTL1_MOUSE] Plays a role in the regulation of contractile properties of both striated and smooth muscles. When unphosphorylated, may inhibit myosin dephosphorylation. Phosphorylation at Ser-301 reduces this inhibitory activity.<ref>PMID:18310078</ref> <ref>PMID:20634291</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/2k3s_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k3s ConSurf].
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The SMTNL1 protein contains a single type-2 calponin homology (CH) domain at its C terminus that shares sequence identity with the smoothelin family of smooth muscle-specific proteins. In contrast to the smoothelins, SMTNL1 does not associate with F-actin in vitro, and its specific role in smooth muscle remains unclear. In addition, the biological function of the C-terminal CH-domains found in the smoothelin proteins is also poorly understood. In this work, we have therefore determined the solution structure of the CH-domain of mouse SMTNL1 (SMTNL1-CH; residues 346-459). The secondary structure and the overall fold for the C-terminal type-2 CH-domain is very similar to that of other CH-domains. However, two clusters of basic residues form a unique surface structure that is characteristic of SMTNL1-CH. Moreover, the protein has an extended C-terminal alpha-helix, which contains a calmodulin (CaM)-binding IQ-motif, that is also a distinct feature of the smoothelins. We have characterized the binding of apo-CaM to SMTNL1-CH through its IQ-motif by isothermal titration calorimetry and NMR chemical shift perturbation studies. In addition, we have used the HADDOCK protein-protein docking approach to construct a model for the complex of apo-CaM and SMTNL1-CH. The model revealed a close interaction of SMTNL1-CH with the two Ca(2+) binding loop regions of the C-terminal domain of apo-CaM; this mode of apo-CaM binding is distinct from previously reported interactions of apo-CaM with IQ-motifs. Finally, we comment on the putative role of the CH-domain in the biological function of SMTNL1.


===HADDOCK-derived structure of the CH-domain of the smoothelin-like 1 complexed with the C-domain of apocalmodulin===
Solution structure of the calponin homology (CH) domain from the smoothelin-like 1 protein: a unique apocalmodulin-binding mode and the possible role of the C-terminal type-2 CH-domain in smooth muscle relaxation.,Ishida H, Borman MA, Ostrander J, Vogel HJ, MacDonald JA J Biol Chem. 2008 Jul 18;283(29):20569-78. Epub 2008 May 12. PMID:18477568<ref>PMID:18477568</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 2k3s" style="background-color:#fffaf0;"></div>


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==See Also==
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*[[Calmodulin 3D structures|Calmodulin 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 18477568 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_18477568}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
2K3S is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K3S OCA].
 
==Reference==
Solution structure of the calponin homology (CH)-domain from the smoothelin-like 1 protein: a unique Apo-calmodulin binding mode and the possible role of the C-terminal type 2 CH-domain in smooth muscle relaxation., Ishida H, Borman Meredith A, Ostrander J, Vogel Hans J, Macdonald Justin A, J Biol Chem. 2008 May 12;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18477568 18477568]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
[[Category: Protein complex]]
[[Category: Xenopus laevis]]
[[Category: Xenopus laevis]]
[[Category: Borman, M A.]]
[[Category: Borman MA]]
[[Category: Ishida, H.]]
[[Category: Ishida H]]
[[Category: MacDonald, J A.]]
[[Category: MacDonald JA]]
[[Category: Ostrander, J.]]
[[Category: Ostrander J]]
[[Category: Vogel, H J.]]
[[Category: Vogel HJ]]
[[Category: Acetylation]]
[[Category: Apocalmodulin complex]]
[[Category: Calcium]]
[[Category: Calponin homology domain]]
[[Category: Ch-domain]]
[[Category: Coiled coil]]
[[Category: Haddock model]]
[[Category: Methylation]]
[[Category: Protein binding]]
[[Category: Smoothelin-like 1]]
 
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Retrieved from "https://proteopedia.org/2k3s"