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New page: left|200px<br /><applet load="1nvj" size="450" color="white" frame="true" align="right" spinBox="true" caption="1nvj, resolution 2.15Å" /> '''Deletion Mutant (Del...
 
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[[Image:1nvj.gif|left|200px]]<br /><applet load="1nvj" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1nvj, resolution 2.15&Aring;" />
'''Deletion Mutant (Delta 141) of Molybdopterin Synthase'''<br />


==Overview==
==Deletion Mutant (Delta 141) of Molybdopterin Synthase==
Molybdenum cofactor biosynthesis is an evolutionarily conserved pathway, present in eubacteria, archaea, and eukaryotes, including humans. Genetic, deficiencies of enzymes involved in cofactor biosynthesis in humans lead, to a severe and usually fatal disease. The molybdenum cofactor contains a, tricyclic pyranopterin, termed molybdopterin, that bears the, cis-dithiolene group responsible for molybdenum ligation. The dithiolene, group of molybdopterin is generated by molybdopterin synthase, which, consists of a large (MoaE) and small (MoaD) subunit. The crystal structure, of molybdopterin synthase revealed a heterotetrameric enzyme in which the, C terminus of each MoaD subunit is deeply inserted into a MoaE subunit to, form the active site. In the activated form of the enzyme, the MoaD C, terminus is present as a thiocarboxylate. The present study identified the, position of the thiocarboxylate sulfur by exploiting the anomalous signal, originating from the sulfur atom. The structure of molybdopterin synthase, in a novel crystal form revealed a binding pocket for the terminal, phosphate of molybdopterin, the product of the enzyme, and suggested a, binding site for the pterin moiety present in precursor Z and, molybdopterin. Finally, the crystal structure of the MoaE homodimer, provides insights into the conformational changes accompanying binding of, the MoaD subunit.
<StructureSection load='1nvj' size='340' side='right'caption='[[1nvj]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1nvj]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NVJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NVJ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nvj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nvj OCA], [https://pdbe.org/1nvj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nvj RCSB], [https://www.ebi.ac.uk/pdbsum/1nvj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nvj ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MOAE_ECOLI MOAE_ECOLI] Converts molybdopterin precursor Z to molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur is provided by MoaD.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nv/1nvj_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nvj ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Molybdenum cofactor biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes, including humans. Genetic deficiencies of enzymes involved in cofactor biosynthesis in humans lead to a severe and usually fatal disease. The molybdenum cofactor contains a tricyclic pyranopterin, termed molybdopterin, that bears the cis-dithiolene group responsible for molybdenum ligation. The dithiolene group of molybdopterin is generated by molybdopterin synthase, which consists of a large (MoaE) and small (MoaD) subunit. The crystal structure of molybdopterin synthase revealed a heterotetrameric enzyme in which the C terminus of each MoaD subunit is deeply inserted into a MoaE subunit to form the active site. In the activated form of the enzyme, the MoaD C terminus is present as a thiocarboxylate. The present study identified the position of the thiocarboxylate sulfur by exploiting the anomalous signal originating from the sulfur atom. The structure of molybdopterin synthase in a novel crystal form revealed a binding pocket for the terminal phosphate of molybdopterin, the product of the enzyme, and suggested a binding site for the pterin moiety present in precursor Z and molybdopterin. Finally, the crystal structure of the MoaE homodimer provides insights into the conformational changes accompanying binding of the MoaD subunit.


==About this Structure==
Structural studies of molybdopterin synthase provide insights into its catalytic mechanism.,Rudolph MJ, Wuebbens MM, Turque O, Rajagopalan KV, Schindelin H J Biol Chem. 2003 Apr 18;278(16):14514-22. Epub 2003 Feb 5. PMID:12571227<ref>PMID:12571227</ref>
1NVJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with NA, GOL and FMT as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1NVJ OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Structural studies of molybdopterin synthase provide insights into its catalytic mechanism., Rudolph MJ, Wuebbens MM, Turque O, Rajagopalan KV, Schindelin H, J Biol Chem. 2003 Apr 18;278(16):14514-22. Epub 2003 Feb 5. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12571227 12571227]
</div>
<div class="pdbe-citations 1nvj" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Rajagopalan, K.V.]]
[[Category: Rajagopalan KV]]
[[Category: Rudolph, M.J.]]
[[Category: Rudolph MJ]]
[[Category: Schindelin, H.]]
[[Category: Schindelin H]]
[[Category: Turque, O.]]
[[Category: Turque O]]
[[Category: Wuebbens, M.M.]]
[[Category: Wuebbens MM]]
[[Category: FMT]]
[[Category: GOL]]
[[Category: NA]]
[[Category: deletion mutant]]
[[Category: molybdenum cofactor biosynthesis]]
 
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Latest revision as of 09:25, 16 August 2023

Deletion Mutant (Delta 141) of Molybdopterin Synthase

1nvj, resolution 2.15Å

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