1pp8: Difference between revisions

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{{Seed}}
[[Image:1pp8.png|left|200px]]


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==crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element==
The line below this paragraph, containing "STRUCTURE_1pp8", creates the "Structure Box" on the page.
<StructureSection load='1pp8' size='340' side='right'caption='[[1pp8]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pp8]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichomonas_vaginalis Trichomonas vaginalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PP8 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1pp8|  PDB=1pp8  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp8 OCA], [https://pdbe.org/1pp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pp8 RCSB], [https://www.ebi.ac.uk/pdbsum/1pp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pp8 ProSAT]</span></td></tr>
 
</table>
===crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element===
== Function ==
 
[https://www.uniprot.org/uniprot/Q95VR4_TRIVA Q95VR4_TRIVA]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_14622596}}, adds the Publication Abstract to the page
Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1pp8_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_14622596}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1PP8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Trichomonas_vaginalis Trichomonas vaginalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP8 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pp8 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structural basis of core promoter recognition in a primitive eukaryote., Schumacher MA, Lau AO, Johnson PJ, Cell. 2003 Nov 14;115(4):413-24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14622596 14622596]
</StructureSection>
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Trichomonas vaginalis]]
[[Category: Trichomonas vaginalis]]
[[Category: Johnson, P J.]]
[[Category: Johnson PJ]]
[[Category: Lau, A O.T.]]
[[Category: Lau AOT]]
[[Category: Schumacher, M A.]]
[[Category: Schumacher MA]]
[[Category: Core promoter]]
[[Category: Ibp39]]
[[Category: Initiator binding protein]]
[[Category: Inr]]
[[Category: T. vaginali]]
[[Category: Transcription]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:24:59 2008''
Retrieved from "https://proteopedia.org/1pp8"