1qbp: Difference between revisions

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[[Image:1qbp.png|left|200px]]


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==CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS==
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<StructureSection load='1qbp' size='340' side='right'caption='[[1qbp]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1qbp]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QBP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CBV:5-BROMOCYTIDINE+5-(DIHYDROGEN+PHOSPHATE)'>CBV</scene></td></tr>
{{STRUCTURE_1qbp|  PDB=1qbp  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qbp OCA], [https://pdbe.org/1qbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qbp RCSB], [https://www.ebi.ac.uk/pdbsum/1qbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qbp ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The X-ray crystal structure of a brominated RNA helix with four mismatched base pairs and sequence r(UG(Br)C(Br)CAGUUCGCUGGC)(2) was determined to 2.1 A using the methods of multiwavelength anomalous diffraction (MAD) applied to the bromine K-absorption edge. There are three molecules in the asymmetric unit with unique crystal-packing environments, revealing true conformational variability at high resolution for this sequence. The structure shows that the sequence itself does not define a consistent pattern of solvent molecules, with the exception of the mismatched base pairs, implying that specific RNA-protein interactions would occur only with the nucleotides. There are a number of significant tertiary interactions, some of which are a result of the brominated base pairs and others that are directly mediated by the RNA 2' hydroxyl groups. The mismatched base pairs exhibit a solvent network as well as a stacking pattern with their nearest neighbors that validate previous thermodynamic analysis.


===CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS===
Crystal structure of a brominated RNA helix with four mismatched base pairs: An investigation into RNA conformational variability.,Anderson AC, O'Neil RH, Filman DJ, Frederick CA Biochemistry. 1999 Sep 28;38(39):12577-85. PMID:10504226<ref>PMID:10504226</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 1qbp" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 10504226 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_10504226}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QBP OCA].
[[Category: Anderson AC]]
 
[[Category: Filman DJ]]
==Reference==
[[Category: Frederick CA]]
Crystal structure of a brominated RNA helix with four mismatched base pairs: An investigation into RNA conformational variability., Anderson AC, O'Neil RH, Filman DJ, Frederick CA, Biochemistry. 1999 Sep 28;38(39):12577-85. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10504226 10504226]
[[Category: O'Neil RH]]
[[Category: Anderson, A C.]]
[[Category: Filman, D J.]]
[[Category: Frederick, C A.]]
[[Category: Neil, R H.O.]]
[[Category: Brominated cytosine]]
[[Category: Mismatched base pair]]
 
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