2dpy: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2dpy.png|left|200px]]


<!--
==Crystal structure of the flagellar type III ATPase FliI==
The line below this paragraph, containing "STRUCTURE_2dpy", creates the "Structure Box" on the page.
<StructureSection load='2dpy' size='340' side='right'caption='[[2dpy]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dpy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DPY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
{{STRUCTURE_2dpy| PDB=2dpy |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpy OCA], [https://pdbe.org/2dpy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dpy RCSB], [https://www.ebi.ac.uk/pdbsum/2dpy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dpy ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FLII_SALTY FLII_SALTY] Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/2dpy_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dpy ConSurf].
<div style="clear:both"></div>


===Crystal structure of the flagellar type III ATPase FliI===
==See Also==
 
*[[Flagellar protein 3D structures|Flagellar protein 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_17202259}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 17202259 is the PubMed ID number.
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-->
[[Category: Imada K]]
{{ABSTRACT_PUBMED_17202259}}
[[Category: Minamino T]]
 
[[Category: Namba K]]
==About this Structure==
2DPY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPY OCA].
 
==Reference==
Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits., Imada K, Minamino T, Tahara A, Namba K, Proc Natl Acad Sci U S A. 2007 Jan 9;104(2):485-90. Epub 2007 Jan 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17202259 17202259]
[[Category: Salmonella typhimurium]]
[[Category: Single protein]]
[[Category: Imada, K.]]
[[Category: Minamino, T.]]
[[Category: Namba, K.]]
[[Category: Alpha-beta structure]]
[[Category: Beta barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 03:45:16 2008''
Retrieved from "https://proteopedia.org/2dpy"