2ext: Difference between revisions

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{{Seed}}
[[Image:2ext.png|left|200px]]


<!--
==TRAP4 (engineered TRAP)==
The line below this paragraph, containing "STRUCTURE_2ext", creates the "Structure Box" on the page.
<StructureSection load='2ext' size='340' side='right'caption='[[2ext]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2ext]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EXT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EXT FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
{{STRUCTURE_2ext|  PDB=2ext |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ext FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ext OCA], [https://pdbe.org/2ext PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ext RCSB], [https://www.ebi.ac.uk/pdbsum/2ext PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ext ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MTRB_GEOSE MTRB_GEOSE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/2ext_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ext ConSurf].
<div style="clear:both"></div>


===TRAP4 (engineered TRAP)===
==See Also==
 
*[[Tryptophan RNA-binding attenuation protein|Tryptophan RNA-binding attenuation protein]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_16698553}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 16698553 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_16698553}}
 
==About this Structure==
2EXT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EXT OCA].
 
==Reference==
Rounding up: Engineering 12-membered rings from the cyclic 11-mer TRAP., Heddle JG, Yokoyama T, Yamashita I, Park SY, Tame JR, Structure. 2006 May;14(5):925-33. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16698553 16698553]
[[Category: Geobacillus stearothermophilus]]
[[Category: Geobacillus stearothermophilus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Heddle, J G.]]
[[Category: Heddle JG]]
[[Category: Park, S Y.]]
[[Category: Park SY]]
[[Category: Tame, J R.H.]]
[[Category: Tame JRH]]
[[Category: Yamashita, I.]]
[[Category: Yamashita I]]
[[Category: Yokoyama, T.]]
[[Category: Yokoyama T]]
[[Category: 12-mer]]
[[Category: Artificial]]
[[Category: Engineered]]
[[Category: Ring protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 04:21:35 2008''

Latest revision as of 13:50, 13 March 2024

TRAP4 (engineered TRAP)

2ext, resolution 1.80Å

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