3bg9: Difference between revisions

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{{Seed}}
[[Image:3bg9.png|left|200px]]


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==Crystal Structure of Human Pyruvate Carboxylase (missing the biotin carboxylase domain at the N-terminus) F1077A Mutant==
The line below this paragraph, containing "STRUCTURE_3bg9", creates the "Structure Box" on the page.
<StructureSection load='3bg9' size='340' side='right'caption='[[3bg9]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3bg9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BG9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BG9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
{{STRUCTURE_3bg9| PDB=3bg9 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bg9 OCA], [https://pdbe.org/3bg9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bg9 RCSB], [https://www.ebi.ac.uk/pdbsum/3bg9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bg9 ProSAT]</span></td></tr>
</table>
== Disease ==
[https://www.uniprot.org/uniprot/PYC_HUMAN PYC_HUMAN] Defects in PC are the cause of pyruvate carboxylase deficiency (PC deficiency) [MIM:[https://omim.org/entry/266150 266150]. PC deficiency leads to lactic acidosis, mental retardation and death. It occurs in three forms: mild or type A, severe neonatal or type B, and a very mild lacticacidemia.
== Function ==
[https://www.uniprot.org/uniprot/PYC_HUMAN PYC_HUMAN] Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/3bg9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bg9 ConSurf].
<div style="clear:both"></div>


===Crystal Structure of Human Pyruvate Carboxylase (missing the biotin carboxylase domain at the N-terminus) F1077A Mutant===
==See Also==
 
*[[Pyruvate carboxylase 3D structures|Pyruvate carboxylase 3D structures]]
 
__TOC__
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 18297087 is the PubMed ID number.
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{{ABSTRACT_PUBMED_18297087}}
 
==Disease==
Known disease associated with this structure: Pyruvate carboxylase deficiency OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=608786 608786]]
 
==About this Structure==
3BG9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BG9 OCA].
 
==Reference==
Crystal structures of human and Staphylococcus aureus pyruvate carboxylase and molecular insights into the carboxyltransfer reaction., Xiang S, Tong L, Nat Struct Mol Biol. 2008 Mar;15(3):295-302. Epub 2008 Feb 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18297087 18297087]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Pyruvate carboxylase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Tong L]]
[[Category: Tong, L.]]
[[Category: Xiang S]]
[[Category: Xiang, S.]]
[[Category: Atp-binding]]
[[Category: Biotin]]
[[Category: Disease mutation]]
[[Category: Gluconeogenesis]]
[[Category: Ligase]]
[[Category: Lipid synthesis]]
[[Category: Manganese]]
[[Category: Mitochondrion]]
[[Category: Multifunctional enzyme]]
[[Category: Nucleotide-binding]]
[[Category: Phosphoprotein]]
[[Category: Tim barrel]]
[[Category: Transit peptide]]
 
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Retrieved from "https://proteopedia.org/3bg9"