1nkn: Difference between revisions

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{{Seed}}
[[Image:1nkn.png|left|200px]]


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==VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTURE OF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD==
The line below this paragraph, containing "STRUCTURE_1nkn", creates the "Structure Box" on the page.
<StructureSection load='1nkn' size='340' side='right'caption='[[1nkn]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1nkn]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Argopecten_irradians Argopecten irradians] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NKN FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkn OCA], [https://pdbe.org/1nkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nkn RCSB], [https://www.ebi.ac.uk/pdbsum/1nkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkn ProSAT]</span></td></tr>
{{STRUCTURE_1nkn|  PDB=1nkn  |  SCENE=  }}
</table>
 
== Function ==
===VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTURE OF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD===
[https://www.uniprot.org/uniprot/Q17042_ARGIR Q17042_ARGIR] [https://www.uniprot.org/uniprot/GCN4_YEAST GCN4_YEAST] Is a transcription factor that is responsible for the activation of more than 30 genes required for amino acid or for purine biosynthesis in response to amino acid or purine starvation. Binds and recognize the DNA sequence: 5'-TGA[CG]TCA-3'.
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_12867988}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 12867988 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/1nkn_consurf.spt"</scriptWhenChecked>
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    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_12867988}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nkn ConSurf].
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKN OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
Visualization of an unstable coiled coil from the scallop myosin rod., Li Y, Brown JH, Reshetnikova L, Blazsek A, Farkas L, Nyitray L, Cohen C, Nature. 2003 Jul 17;424(6946):341-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12867988 12867988]
[[Category: Argopecten irradians]]
[[Category: Blazsek, A.]]
[[Category: Large Structures]]
[[Category: Brown, J H.]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Cohen, C.]]
[[Category: Blazsek A]]
[[Category: Farkas, L.]]
[[Category: Brown JH]]
[[Category: Li, Y.]]
[[Category: Cohen C]]
[[Category: Nyitray, L.]]
[[Category: Farkas L]]
[[Category: Reshetnikova, L.]]
[[Category: Li Y]]
[[Category: Alpha helix]]
[[Category: Nyitray L]]
[[Category: Coiled coil]]
[[Category: Reshetnikova L]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 06:19:46 2008''

Latest revision as of 07:57, 14 February 2024

VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTURE OF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD

1nkn, resolution 2.50Å

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