1yew: Difference between revisions

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{{Seed}}
[[Image:1yew.png|left|200px]]


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==Crystal structure of particulate methane monooxygenase==
The line below this paragraph, containing "STRUCTURE_1yew", creates the "Structure Box" on the page.
<StructureSection load='1yew' size='340' side='right'caption='[[1yew]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1yew]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylococcus_capsulatus Methylococcus capsulatus] and [https://en.wikipedia.org/wiki/Methylococcus_capsulatus_str._Bath Methylococcus capsulatus str. Bath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YEW FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.801&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CUA:DINUCLEAR+COPPER+ION'>CUA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1yew|  PDB=1yew  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yew FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yew OCA], [https://pdbe.org/1yew PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yew RCSB], [https://www.ebi.ac.uk/pdbsum/1yew PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yew ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PMOB_METCA PMOB_METCA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ye/1yew_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yew ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Particulate methane monooxygenase (pMMO) is an integral membrane metalloenzyme that catalyses the conversion of methane to methanol. Knowledge of how pMMO performs this extremely challenging chemistry may have an impact on the use of methane as an alternative energy source by facilitating the development of new synthetic catalysts. We have determined the structure of pMMO from the methanotroph Methylococcus capsulatus (Bath) to a resolution of 2.8 A. The enzyme is a trimer with an alpha3beta3gamma3 polypeptide arrangement. Two metal centres, modelled as mononuclear copper and dinuclear copper, are located in soluble regions of each pmoB subunit, which resembles cytochrome c oxidase subunit II. A third metal centre, occupied by zinc in the crystal, is located within the membrane. The structure provides new insight into the molecular details of biological methane oxidation.


===Crystal structure of particulate methane monooxygenase===
Crystal structure of a membrane-bound metalloenzyme that catalyses the biological oxidation of methane.,Lieberman RL, Rosenzweig AC Nature. 2005 Mar 10;434(7030):177-82. Epub 2005 Jan 26. PMID:15674245<ref>PMID:15674245</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1yew" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_15674245}}, adds the Publication Abstract to the page
*[[Methane monooxygenase 3D structures|Methane monooxygenase 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 15674245 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_15674245}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
1YEW is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Methylococcus_capsulatus Methylococcus capsulatus] and [http://en.wikipedia.org/wiki/Methylococcus_capsulatus_str._bath Methylococcus capsulatus str. bath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEW OCA].
 
==Reference==
Crystal structure of a membrane-bound metalloenzyme that catalyses the biological oxidation of methane., Lieberman RL, Rosenzweig AC, Nature. 2005 Mar 10;434(7030):177-82. Epub 2005 Jan 26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15674245 15674245]
[[Category: Methylococcus capsulatus]]
[[Category: Methylococcus capsulatus]]
[[Category: Methylococcus capsulatus str. bath]]
[[Category: Methylococcus capsulatus str. Bath]]
[[Category: Protein complex]]
[[Category: Lieberman RL]]
[[Category: Lieberman, R L.]]
[[Category: Rosenzweig AC]]
[[Category: Rosenzweig, A C.]]
[[Category: Beta barrel]]
[[Category: Copper]]
[[Category: Membrane protein]]
[[Category: Methane]]
[[Category: Zinc]]
 
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Retrieved from "https://proteopedia.org/1yew"