1jyb: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1jyb.png|left|200px]]


<!--
==Crystal structure of Rubrerythrin==
The line below this paragraph, containing "STRUCTURE_1jyb", creates the "Structure Box" on the page.
<StructureSection load='1jyb' size='340' side='right'caption='[[1jyb]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1jyb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JYB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1jyb|  PDB=1jyb  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jyb OCA], [https://pdbe.org/1jyb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jyb RCSB], [https://www.ebi.ac.uk/pdbsum/1jyb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jyb ProSAT]</span></td></tr>
 
</table>
===Crystal structure of Rubrerythrin===
== Function ==
 
[https://www.uniprot.org/uniprot/RUBY_DESVH RUBY_DESVH] May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide (By similarity).
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12459910}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 12459910 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jy/1jyb_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12459910}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1JYB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JYB OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jyb ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Crystal structure studies on rubrerythrin: enzymatic activity in relation to the zinc movement., Li M, Liu MY, LeGall J, Gui LL, Liao J, Jiang T, Zhang JP, Liang DC, Chang WR, J Biol Inorg Chem. 2003 Jan;8(1-2):149-55. Epub 2002 Sep 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12459910 12459910]
</StructureSection>
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Chang, W R.]]
[[Category: Chang WR]]
[[Category: Li, M.]]
[[Category: Li M]]
[[Category: Liu, M Y.]]
[[Category: Liu MY]]
[[Category: Alpha helix bundle]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 10:59:42 2008''
Retrieved from "https://proteopedia.org/1jyb"