1yzc: Difference between revisions

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{{Seed}}
[[Image:1yzc.png|left|200px]]


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==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==
The line below this paragraph, containing "STRUCTURE_1yzc", creates the "Structure Box" on the page.
<StructureSection load='1yzc' size='340' side='right'caption='[[1yzc]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [https://pdbe.org/1yzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [https://www.ebi.ac.uk/pdbsum/1yzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzc ProSAT]</span></td></tr>
{{STRUCTURE_1yzc|  PDB=1yzc  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q0SXH8_SHIF8 Q0SXH8_SHIF8]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/1yzc_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yzc ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Using native-state hydrogen-exchange-directed protein engineering and multidimensional NMR, we determined the high-resolution structure (rms deviation, 1.1 angstroms) for an intermediate of the four-helix bundle protein: Rd-apocytochrome b562. The intermediate has the N-terminal helix and a part of the C-terminal helix unfolded. In earlier studies, we also solved the structures of two other folding intermediates for the same protein: one with the N-terminal helix alone unfolded and the other with a reorganized hydrophobic core. Together, these structures provide a description of a protein folding pathway with multiple intermediates at atomic resolution. The two general features for the intermediates are (i) native-like backbone topology and (ii) nonnative side-chain interactions. These results have implications for important issues in protein folding studies, including large-scale conformation search, -value analysis, and computer simulations.


===The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded===
A protein folding pathway with multiple folding intermediates at atomic resolution.,Feng H, Zhou Z, Bai Y Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):5026-31. Epub 2005 Mar 25. PMID:15793003<ref>PMID:15793003</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
The line below this paragraph, {{ABSTRACT_PUBMED_15793003}}, adds the Publication Abstract to the page
<div class="pdbe-citations 1yzc" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 15793003 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_15793003}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Homo sapiens]]
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA].
[[Category: Large Structures]]
 
[[Category: Bai Y]]
==Reference==
[[Category: Feng H]]
A protein folding pathway with multiple folding intermediates at atomic resolution., Feng H, Zhou Z, Bai Y, Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):5026-31. Epub 2005 Mar 25. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15793003 15793003]
[[Category: Zhou Z]]
[[Category: BSGC, Berkeley Structural Genomics Center.]]
[[Category: Bai, Y.]]
[[Category: Feng, H.]]
[[Category: Zhou, Z.]]
[[Category: Berkeley structural genomics center]]
[[Category: Bsgc]]
[[Category: Folding intermediate]]
[[Category: Native-state hydrogen exchange]]
[[Category: Nmr]]
[[Category: Protein engineering]]
[[Category: Protein structure]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
 
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Retrieved from "https://proteopedia.org/1yzc"