1wyd: Difference between revisions

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{{Seed}}
[[Image:1wyd.png|left|200px]]


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==Crystal Structure of Aspartyl-tRNA synthetase from Sulfolobus tokodaii==
The line below this paragraph, containing "STRUCTURE_1wyd", creates the "Structure Box" on the page.
<StructureSection load='1wyd' size='340' side='right'caption='[[1wyd]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1wyd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WYD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1wyd| PDB=1wyd |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wyd OCA], [https://pdbe.org/1wyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wyd RCSB], [https://www.ebi.ac.uk/pdbsum/1wyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wyd ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/SYDND_SULTO SYDND_SULTO] Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).[HAMAP-Rule:MF_02075]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wy/1wyd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wyd ConSurf].
<div style="clear:both"></div>


===Crystal Structure of Aspartyl-tRNA synthetase from Sulfolobus tokodaii===
==See Also==
 
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_17881821}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 17881821 is the PubMed ID number.
[[Category: Sulfurisphaera tokodaii str. 7]]
-->
[[Category: Hossain MT]]
{{ABSTRACT_PUBMED_17881821}}
[[Category: Maeda Y]]
 
[[Category: Sekiguchi T]]
==About this Structure==
[[Category: Suzuki K]]
1WYD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WYD OCA].
[[Category: Takenaka A]]
 
[[Category: Ubukata S]]
==Reference==
Structure of the nondiscriminating aspartyl-tRNA synthetase from the crenarchaeon Sulfolobus tokodaii strain 7 reveals the recognition mechanism for two different tRNA anticodons., Sato Y, Maeda Y, Shimizu S, Hossain MT, Ubukata S, Suzuki K, Sekiguchi T, Takenaka A, Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1042-7. Epub 2007, Sep 19. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17881821 17881821]
[[Category: Single protein]]
[[Category: Sulfolobus tokodaii]]
[[Category: Hossain, M T.]]
[[Category: Maeda, Y.]]
[[Category: Sekiguchi, T.]]
[[Category: Suzuki, K.]]
[[Category: Takenaka, A.]]
[[Category: Ubukata, S.]]
[[Category: Archaea]]
[[Category: Aspartyl-trna synthetase]]
[[Category: Ligase]]
[[Category: Sulfolobus tokodaii]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 11:56:26 2008''
Retrieved from "https://proteopedia.org/1wyd"