1yup: Difference between revisions

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{{Seed}}
[[Image:1yup.png|left|200px]]


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==Reindeer beta-lactoglobulin==
The line below this paragraph, containing "STRUCTURE_1yup", creates the "Structure Box" on the page.
<StructureSection load='1yup' size='340' side='right'caption='[[1yup]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1yup]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Rangifer_tarandus Rangifer tarandus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YUP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YUP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yup OCA], [https://pdbe.org/1yup PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yup RCSB], [https://www.ebi.ac.uk/pdbsum/1yup PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yup ProSAT]</span></td></tr>
{{STRUCTURE_1yup|  PDB=1yup  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q00P86_RANTA Q00P86_RANTA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yu/1yup_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yup ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Reindeer beta-lactoglobulin (betaLG) belongs to the lipocalin superfamily. Its DNA and protein sequences have been determined and showed that it had nine residue changes from bovine betaLG. Reindeer betaLG, the structure of which was finally determined at 2.1 A resolution in space group P1, crystallized in a unit cell that is both P2-like and P2(1)-like owing to the presence of an almost perfect (but noncrystallographic) body-centring vector. The non-body-centred data could only be observed using a very bright synchrotron beam and a novel refinement strategy was adopted to enable us to use the weak h + k + l = 2n + 1 reflections.


===Reindeer beta-lactoglobulin===
Reindeer beta-lactoglobulin crystal structure with pseudo-body-centred noncrystallographic symmetry.,Oksanen E, Jaakola VP, Tolonen T, Valkonen K, Akerstrom B, Kalkkinen N, Virtanen V, Goldman A Acta Crystallogr D Biol Crystallogr. 2006 Nov;62(Pt 11):1369-74. Epub 2006, Oct 18. PMID:17057340<ref>PMID:17057340</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1yup" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_17057340}}, adds the Publication Abstract to the page
*[[Beta-lactoglobulin 3D structures|Beta-lactoglobulin 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 17057340 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_17057340}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YUP OCA].
[[Category: Rangifer tarandus]]
 
[[Category: Goldman A]]
==Reference==
[[Category: Oksanen E]]
Reindeer beta-lactoglobulin crystal structure with pseudo-body-centred noncrystallographic symmetry., Oksanen E, Jaakola VP, Tolonen T, Valkonen K, Akerstrom B, Kalkkinen N, Virtanen V, Goldman A, Acta Crystallogr D Biol Crystallogr. 2006 Nov;62(Pt 11):1369-74. Epub 2006, Oct 18. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17057340 17057340]
[[Category: Goldman, A.]]
[[Category: Oksanen, E.]]
[[Category: Transport protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 12:20:33 2008''

Latest revision as of 00:42, 21 November 2024

Reindeer beta-lactoglobulin

1yup, resolution 2.10Å

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