2pgg: Difference between revisions

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{{Seed}}
[[Image:2pgg.png|left|200px]]


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==Crystal Structure of a Birnavirus (IBDV) RNA-dependent RNA Polymerase VP1==
The line below this paragraph, containing "STRUCTURE_2pgg", creates the "Structure Box" on the page.
<StructureSection load='2pgg' size='340' side='right'caption='[[2pgg]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2pgg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Infectious_bursal_disease_virus Infectious bursal disease virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PGG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PGG FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pgg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pgg OCA], [https://pdbe.org/2pgg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pgg RCSB], [https://www.ebi.ac.uk/pdbsum/2pgg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pgg ProSAT]</span></td></tr>
{{STRUCTURE_2pgg| PDB=2pgg |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RDRP_IBDV RDRP_IBDV] RNA-dependent RNA polymerase which is found both free and covalently attached to the genomic RNA. May also contain guanylyl and methyl transferase activities (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/2pgg_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pgg ConSurf].
<div style="clear:both"></div>


===Crystal Structure of a Birnavirus (IBDV) RNA-dependent RNA Polymerase VP1===
==See Also==
 
*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_17456597}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 17456597 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_17456597}}
 
==About this Structure==
2PGG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Infectious_bursal_disease_virus Infectious bursal disease virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PGG OCA].
 
==Reference==
The structure of a birnavirus polymerase reveals a distinct active site topology., Pan J, Vakharia VN, Tao YJ, Proc Natl Acad Sci U S A. 2007 May 1;104(18):7385-90. Epub 2007 Apr 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17456597 17456597]
[[Category: Infectious bursal disease virus]]
[[Category: Infectious bursal disease virus]]
[[Category: RNA-directed RNA polymerase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Pan J]]
[[Category: Pan, J.]]
[[Category: Tao YJ]]
[[Category: Tao, Y J.]]
[[Category: Vakharia VN]]
[[Category: Vakharia, V N.]]
[[Category: Birnavirus]]
[[Category: Dsrna virus]]
[[Category: Ibdv]]
[[Category: Permutation]]
[[Category: Polymerase]]
[[Category: Rdrp]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 12:36:24 2008''
Retrieved from "https://proteopedia.org/2pgg"