1q32: Difference between revisions

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New page: left|200px<br /><applet load="1q32" size="450" color="white" frame="true" align="right" spinBox="true" caption="1q32, resolution 2.03Å" /> '''Crystal Structure An...
 
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[[Image:1q32.gif|left|200px]]<br /><applet load="1q32" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1q32, resolution 2.03&Aring;" />
'''Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase'''<br />


==About this Structure==
==Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase==
1Q32 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1Q32 OCA].  
<StructureSection load='1q32' size='340' side='right'caption='[[1q32]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1q32]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q32 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q32 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q32 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q32 OCA], [https://pdbe.org/1q32 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q32 RCSB], [https://www.ebi.ac.uk/pdbsum/1q32 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q32 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TYDP1_YEAST TYDP1_YEAST] DNA repair enzyme that can remove a variety of covalent adducts from DNA through hydrolysis of a 3'-phosphodiester bond, giving rise to DNA with a free 3' phosphate. Catalyzes the hydrolysis of dead-end complexes between DNA and the topoisomerase I active site tyrosine residue. Hydrolyzes 3'-phosphoglycolates on protruding 3' ends on DNA double-strand breaks due to DNA damage by radiation and free radicals. Cleaves also 5' phosphotyrosyl adducts resulting from dead-end complexes between DNA and the active site tyrosine of topoisomerase II. Contributes to DNA repair after radiation damage. Acts on blunt-ended double-strand DNA breaks and on single-stranded DNA. May have low 3'exonuclease activity and may be able to remove a single nucleoside from the 3'end of DNA and RNA molecules with 3'hydroxyl groups. Has no exonuclease activity towards DNA or RNA with a 3'phosphate (By similarity).<ref>PMID:10521354</ref> <ref>PMID:16751265</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q3/1q32_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q32 ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Babaoglu K]]
[[Category: Babaoglu, K.]]
[[Category: He X]]
[[Category: He, X.]]
[[Category: Nitiss JL]]
[[Category: Nitiss, J.L.]]
[[Category: Nitiss KC]]
[[Category: Nitiss, K.C.]]
[[Category: Price A]]
[[Category: Price, A.]]
[[Category: White SW]]
[[Category: White, S.W.]]
[[Category: tyrosyl-dna phosphodiesterase; tdp; dna repair]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 00:20:45 2007''

Latest revision as of 08:12, 14 February 2024

Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase

1q32, resolution 2.03Å

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