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New page: left|200px<br /><applet load="1qk5" size="450" color="white" frame="true" align="right" spinBox="true" caption="1qk5, resolution 1.60Å" /> '''TOXOPLASMA GONDII HY...
 
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[[Image:1qk5.gif|left|200px]]<br /><applet load="1qk5" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1qk5, resolution 1.60&Aring;" />
'''TOXOPLASMA GONDII HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE WITH XMP, PYROPHOSPHATE AND TWO MG2+ IONS'''<br />


==Overview==
==TOXOPLASMA GONDII HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE WITH XMP, PYROPHOSPHATE AND TWO MG2+ IONS==
The crystal structure of the Toxoplasma gondii hypoxanthine-guanine, phosphoribosyltransferase (HGPRT)-xanthosine 5'-monophosphate, (XMP)-pyrophosphate-Mg(2+) ternary complex has been determined at 1. 60 A, resolution. This biproduct, post-transition state structure is of a T., gondii HGPRT mutant (Asp150Ala or D150A). The D150A mutant has reduced, activity (k(cat) lower by 11-, 296-, and 8.6-fold for hypoxanthine, guanine, and xanthine, respectively) compared to wild-type T. gondii, HGPRT. The Michaelis constants for purine bases are altered only slightly, whereas those for alpha-D-5-phosphoribosyl 1-pyrophosphate (PRPP) are, lower by approximately 6.5-fold. The ternary complex crystallizes in space, group C222(1) (a = 55.21 A, b = 112.25 A, and c = 144.28 A) with two, subunits in the asymmetric unit; the HGPRT tetramer is completed by the, application of 2-fold crystallographic symmetry. All active sites contain, XMP inverted question markbound in a fashion similar to that of the, guanosine 5'-monophosphate (GMP) and inosine 5'-monophosphate (IMP), complexes reported in the preceding article [Heroux, A., et al. (1999), Biochemistry 38, 14485-14494] inverted question mark, pyrophosphate, and, two Mg(2+) ions. Each Mg(2+) ion is octahedrally coordinated by two, terminal pyrophosphate oxygen atoms and several ordered water molecules., This structure shows how HGPRT uses two Mg(2+) ions to orient and activate, the pyrophosphate moiety of PRPP for attack by a purine base, and why, mutation in humans of the residue corresponding to Asp206, the only HGPRT, amino acid that directly contacts the Mg(2+) ions, causes Lesch-Nyhan, syndrome (HGPRT(Kinston), D193N). The Leu78-Lys79 peptide bond in the, active site adopts the cis configuration, which it must to bind PRPP or, pyrophosphate. The contribution of cis-trans isomerization of this peptide, bond to the energetics of substrate binding and product release is, discussed. A comprehensive description of the HGPRT reaction mechanism is, also proposed.
<StructureSection load='1qk5' size='340' side='right'caption='[[1qk5]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1qk5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii_RH Toxoplasma gondii RH]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QK5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QK5 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene>, <scene name='pdbligand=XMP:XANTHOSINE-5-MONOPHOSPHATE'>XMP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qk5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qk5 OCA], [https://pdbe.org/1qk5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qk5 RCSB], [https://www.ebi.ac.uk/pdbsum/1qk5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qk5 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/HGXR_TOXGO HGXR_TOXGO] Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to the N(9) of hypoxanthine, guanine or xanthine.<ref>PMID:11188695</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qk/1qk5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qk5 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The crystal structure of the Toxoplasma gondii hypoxanthine-guanine phosphoribosyltransferase (HGPRT)-xanthosine 5'-monophosphate (XMP)-pyrophosphate-Mg(2+) ternary complex has been determined at 1. 60 A resolution. This biproduct, post-transition state structure is of a T. gondii HGPRT mutant (Asp150Ala or D150A). The D150A mutant has reduced activity (k(cat) lower by 11-, 296-, and 8.6-fold for hypoxanthine, guanine, and xanthine, respectively) compared to wild-type T. gondii HGPRT. The Michaelis constants for purine bases are altered only slightly, whereas those for alpha-D-5-phosphoribosyl 1-pyrophosphate (PRPP) are lower by approximately 6.5-fold. The ternary complex crystallizes in space group C222(1) (a = 55.21 A, b = 112.25 A, and c = 144.28 A) with two subunits in the asymmetric unit; the HGPRT tetramer is completed by the application of 2-fold crystallographic symmetry. All active sites contain XMP inverted question markbound in a fashion similar to that of the guanosine 5'-monophosphate (GMP) and inosine 5'-monophosphate (IMP) complexes reported in the preceding article [Heroux, A., et al. (1999) Biochemistry 38, 14485-14494] inverted question mark, pyrophosphate, and two Mg(2+) ions. Each Mg(2+) ion is octahedrally coordinated by two terminal pyrophosphate oxygen atoms and several ordered water molecules. This structure shows how HGPRT uses two Mg(2+) ions to orient and activate the pyrophosphate moiety of PRPP for attack by a purine base, and why mutation in humans of the residue corresponding to Asp206, the only HGPRT amino acid that directly contacts the Mg(2+) ions, causes Lesch-Nyhan syndrome (HGPRT(Kinston), D193N). The Leu78-Lys79 peptide bond in the active site adopts the cis configuration, which it must to bind PRPP or pyrophosphate. The contribution of cis-trans isomerization of this peptide bond to the energetics of substrate binding and product release is discussed. A comprehensive description of the HGPRT reaction mechanism is also proposed.


==About this Structure==
Crystal structure of Toxoplasma gondii hypoxanthine-guanine phosphoribosyltransferase with XMP, pyrophosphate, and two Mg(2+) ions bound: insights into the catalytic mechanism.,Heroux A, White EL, Ross LJ, Davis RL, Borhani DW Biochemistry. 1999 Nov 2;38(44):14495-506. PMID:10545171<ref>PMID:10545171</ref>
1QK5 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii] with MG, XMP and POP as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Hypoxanthine_phosphoribosyltransferase Hypoxanthine phosphoribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.8 2.4.2.8] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1QK5 OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Crystal structure of Toxoplasma gondii hypoxanthine-guanine phosphoribosyltransferase with XMP, pyrophosphate, and two Mg(2+) ions bound: insights into the catalytic mechanism., Heroux A, White EL, Ross LJ, Davis RL, Borhani DW, Biochemistry. 1999 Nov 2;38(44):14495-506. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10545171 10545171]
</div>
[[Category: Hypoxanthine phosphoribosyltransferase]]
<div class="pdbe-citations 1qk5" style="background-color:#fffaf0;"></div>
[[Category: Single protein]]
[[Category: Toxoplasma gondii]]
[[Category: Borhani, D.W.]]
[[Category: Davis, R.L.]]
[[Category: Heroux, A.]]
[[Category: Ross, L.J.]]
[[Category: White, E.L.]]
[[Category: MG]]
[[Category: POP]]
[[Category: XMP]]
[[Category: glycosyltransferase]]
[[Category: purine salvage]]
[[Category: transferase]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 00:45:52 2007''
==See Also==
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Toxoplasma gondii RH]]
[[Category: Borhani DW]]
[[Category: Davis RL]]
[[Category: Heroux A]]
[[Category: Ross LJ]]
[[Category: White EL]]

Latest revision as of 05:06, 24 June 2026

TOXOPLASMA GONDII HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE WITH XMP, PYROPHOSPHATE AND TWO MG2+ IONS

1qk5, resolution 1.60Å

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