3dny: Difference between revisions

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{{Seed}}
[[Image:3dny.png|left|200px]]


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==Fitting of the eEF2 crystal structure into the cryo-EM density map of the eEF2.80S.AlF4-.GDP complex==
The line below this paragraph, containing "STRUCTURE_3dny", creates the "Structure Box" on the page.
<SX load='3dny' size='340' side='right' viewer='molstar' caption='[[3dny]], [[Resolution|resolution]] 12.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dny]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DNY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12.6&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dny FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dny OCA], [https://pdbe.org/3dny PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dny RCSB], [https://www.ebi.ac.uk/pdbsum/3dny PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dny ProSAT]</span></td></tr>
{{STRUCTURE_3dny| PDB=3dny |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/EF2_YEAST EF2_YEAST]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/3dny_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dny ConSurf].
<div style="clear:both"></div>


===Fitting of the eEF2 crystal structure into the cryo-EM density map of the eEF2.80S.AlF4-.GDP complex===
==See Also==
 
*[[Elongation factor 3D structures|Elongation factor 3D structures]]
 
__TOC__
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</SX>
The line below this paragraph, {{ABSTRACT_PUBMED_18644383}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 18644383 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_18644383}}
 
==About this Structure==
3DNY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNY OCA].
 
==Reference==
Visualization of the eEF2-80S Ribosome Transition-State Complex by Cryo-Electron Microscopy., Sengupta J, Nilsson J, Gursky R, Kjeldgaard M, Nissen P, Frank J, J Mol Biol. 2008 Jul 11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18644383 18644383]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Frank J]]
[[Category: Frank, J.]]
[[Category: Sengupta J]]
[[Category: Sengupta, J.]]
[[Category: 80s ribosome]]
[[Category: Alf4-]]
[[Category: Cell cycle]]
[[Category: Cytoplasm]]
[[Category: Eef2 transition state complex]]
[[Category: Elongation factor]]
[[Category: Gdp]]
[[Category: Gtp-binding]]
[[Category: Gtpase]]
[[Category: Nucleotide-binding]]
[[Category: Phosphoprotein]]
[[Category: Protein biosynthesis]]
[[Category: Rna-binding]]
[[Category: Rrna-binding]]
[[Category: Translocation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 20 11:29:23 2008''

Latest revision as of 09:42, 21 February 2024

Fitting of the eEF2 crystal structure into the cryo-EM density map of the eEF2.80S.AlF4-.GDP complex

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