3dkz: Difference between revisions

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{{Seed}}
[[Image:3dkz.jpg|left|200px]]


<!--
==Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.==
The line below this paragraph, containing "STRUCTURE_3dkz", creates the "Structure Box" on the page.
<StructureSection load='3dkz' size='340' side='right'caption='[[3dkz]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dkz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"acinetobacter_parapertussis"_(eldering_and_kendrick_1938)_steel_and_cowan_1964 "acinetobacter parapertussis" (eldering and kendrick 1938) steel and cowan 1964]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKZ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-->
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BPP1634 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=519 "Acinetobacter parapertussis" (Eldering and Kendrick 1938) Steel and Cowan 1964])</td></tr>
{{STRUCTURE_3dkz|  PDB=3dkz  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dkz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dkz OCA], [https://pdbe.org/3dkz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dkz RCSB], [https://www.ebi.ac.uk/pdbsum/3dkz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dkz ProSAT], [https://www.topsan.org/Proteins/NESGC/3dkz TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3DKZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_parapertussis Bordetella parapertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKZ OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/3dkz_consurf.spt"</scriptWhenChecked>
[[Category: Bordetella parapertussis]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Acton, T B.]]
  </jmolCheckbox>
[[Category: Ciccosanti, C.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dkz ConSurf].
[[Category: Foote, E L.]]
<div style="clear:both"></div>
[[Category: Hunt, J F.]]
__TOC__
[[Category: Mao, L.]]
</StructureSection>
[[Category: Montelione, G T.]]
[[Category: Large Structures]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Acton, T B]]
[[Category: Seetharaman, J.]]
[[Category: Ciccosanti, C]]
[[Category: Su, M.]]
[[Category: Foote, E L]]
[[Category: Tong, L.]]
[[Category: Hunt, J F]]
[[Category: Vorobiev, S M.]]
[[Category: Mao, L]]
[[Category: Wang, D.]]
[[Category: Montelione, G T]]
[[Category: Xiao, R.]]
[[Category: Structural genomic]]
[[Category: Seetharaman, J]]
[[Category: Su, M]]
[[Category: Tong, L]]
[[Category: Vorobiev, S M]]
[[Category: Wang, D]]
[[Category: Xiao, R]]
[[Category: Borpa]]
[[Category: Borpa]]
[[Category: Bpr208c]]
[[Category: Bpr208c]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Nesg]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Pf03061]]
[[Category: Pf03061]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Q7w9w5]]
[[Category: Q7w9w5]]
[[Category: Structural genomic]]
[[Category: Thioesterase superfamily]]
[[Category: Thioesterase superfamily]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 27 11:30:15 2008''
Retrieved from "https://proteopedia.org/3dkz"