3dmh: Difference between revisions

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{{Seed}}
[[Image:3dmh.png|left|200px]]


<!--
==T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoMet and Guanosine==
The line below this paragraph, containing "STRUCTURE_3dmh", creates the "Structure Box" on the page.
<StructureSection load='3dmh' size='340' side='right'caption='[[3dmh]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dmh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMH FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GMP:GUANOSINE'>GMP</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3dmh|  PDB=3dmh  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmh OCA], [https://pdbe.org/3dmh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmh RCSB], [https://www.ebi.ac.uk/pdbsum/3dmh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmh ProSAT]</span></td></tr>
 
</table>
===T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoMet and Guanosine===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5SKW0_THET8 Q5SKW0_THET8]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18667428}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18667428 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmh_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18667428}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3DMH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMH OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dmh ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Crystal structure of the thermus thermophilus 16S rRNA methyltransferase RsmC in complex with cofactor and substrate guanosine., Demirci H, Gregory ST, Dahlberg AE, Jogl G, J Biol Chem. 2008 Jul 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18667428 18667428]
</StructureSection>
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus HB8]]
[[Category: Dahlberg, A E.]]
[[Category: Dahlberg AE]]
[[Category: Demirci, H.]]
[[Category: Demirci H]]
[[Category: Gregory, S T.]]
[[Category: Gregory ST]]
[[Category: Jogl, G.]]
[[Category: Jogl G]]
[[Category: 16s rrna methyltransferase]]
[[Category: Methyltransferase]]
[[Category: Monomethyltranserase]]
[[Category: N2 g1207 methyltransferase]]
[[Category: S-adenosyl-l-homocysteine]]
[[Category: Transferase]]
[[Category: Translation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 10 09:08:11 2008''

Latest revision as of 09:42, 21 February 2024

T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoMet and Guanosine

3dmh, resolution 1.55Å

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