3dh1: Difference between revisions

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{{Seed}}
[[Image:3dh1.jpg|left|200px]]


<!--
==Crystal structure of human tRNA-specific adenosine-34 deaminase subunit ADAT2==
The line below this paragraph, containing "STRUCTURE_3dh1", creates the "Structure Box" on the page.
<StructureSection load='3dh1' size='340' side='right'caption='[[3dh1]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dh1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DH1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DH1 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3dh1| PDB=3dh1 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dh1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dh1 OCA], [https://pdbe.org/3dh1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dh1 RCSB], [https://www.ebi.ac.uk/pdbsum/3dh1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dh1 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/ADAT2_HUMAN ADAT2_HUMAN] Probably participates in deamination of adenosine-34 to inosine in many tRNAs.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dh1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dh1 ConSurf].
<div style="clear:both"></div>


===Crystal structure of human tRNA-specific adenosine-34 deaminase subunit ADAT2 (CASP Target)===
==See Also==
 
*[[Adenosine deaminase 3D structures|Adenosine deaminase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
3DH1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DH1 OCA].
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Andersson, J.]]
[[Category: Andersson J]]
[[Category: Arrowsmith, C H.]]
[[Category: Arrowsmith CH]]
[[Category: Berg, S van der.]]
[[Category: Berglund H]]
[[Category: Berglund, H.]]
[[Category: Collins R]]
[[Category: Collins, R.]]
[[Category: Dahlgren LG]]
[[Category: Dahlgren, L G.]]
[[Category: Edwards AM]]
[[Category: Edwards, A M.]]
[[Category: Flodin S]]
[[Category: Flodin, S.]]
[[Category: Flores A]]
[[Category: Flores, A.]]
[[Category: Graslund S]]
[[Category: Graslund, S.]]
[[Category: Hammarstrom M]]
[[Category: Hammarstrom, M.]]
[[Category: Johansson A]]
[[Category: Johansson, A.]]
[[Category: Johansson I]]
[[Category: Johansson, I.]]
[[Category: Karlberg T]]
[[Category: Karlberg, T.]]
[[Category: Kotenyova T]]
[[Category: Kotenyova, T.]]
[[Category: Lehtio L]]
[[Category: Lehtio, L.]]
[[Category: Moche M]]
[[Category: Moche, M.]]
[[Category: Nilsson ME]]
[[Category: Nilsson, M E.]]
[[Category: Nordlund P]]
[[Category: Nordlund, P.]]
[[Category: Nyman T]]
[[Category: Nyman, T.]]
[[Category: Olesen K]]
[[Category: Olesen, K.]]
[[Category: Persson C]]
[[Category: Persson, C.]]
[[Category: Sagemark J]]
[[Category: SGC, Structural Genomics Consortium.]]
[[Category: Schueler H]]
[[Category: Sagemark, J.]]
[[Category: Thorsell AG]]
[[Category: Schueler, H.]]
[[Category: Tresaugues L]]
[[Category: Thorsell, A G.]]
[[Category: Welin M]]
[[Category: Tresaugues, L.]]
[[Category: Wikstrom M]]
[[Category: Welin, M.]]
[[Category: Wisniewska M]]
[[Category: Wikstrom, M.]]
[[Category: Van der Berg S]]
[[Category: Wisniewska, M.]]
[[Category: Alternative splicing]]
[[Category: Hydrolase]]
[[Category: Metal-binding]]
[[Category: Sgc]]
[[Category: Structural genomic]]
[[Category: Structural genomics consortium]]
[[Category: Translation]]
[[Category: Trna processing]]
[[Category: Trna-specific adenosine deaminase]]
[[Category: Zinc-binding protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 10 13:06:33 2008''

Latest revision as of 12:46, 30 August 2023

Crystal structure of human tRNA-specific adenosine-34 deaminase subunit ADAT2

3dh1, resolution 2.80Å

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