2zif: Difference between revisions

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{{Seed}}
[[Image:2zif.png|left|200px]]


<!--
==Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine==
The line below this paragraph, containing "STRUCTURE_2zif", creates the "Structure Box" on the page.
<StructureSection load='2zif' size='340' side='right'caption='[[2zif]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
{{STRUCTURE_2zif|  PDB=2zif  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [https://pdbe.org/2zif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [https://www.ebi.ac.uk/pdbsum/2zif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zif ProSAT]</span></td></tr>
 
</table>
===Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5SL84_THET8 Q5SL84_THET8]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2ZIF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zi/2zif_consurf.spt"</scriptWhenChecked>
Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8., Morita R, Ishikawa H, Nakagawa N, Kuramitsu S, Masui R, Proteins. 2008 Oct;73(1):259-64. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18618709 18618709]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zif ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Ishikawa, H.]]
[[Category: Ishikawa H]]
[[Category: Kuramitsu, S.]]
[[Category: Kuramitsu S]]
[[Category: Masui, R.]]
[[Category: Masui R]]
[[Category: Morita, R.]]
[[Category: Morita R]]
[[Category: Nakagawa, N.]]
[[Category: Nakagawa N]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S.]]
[[Category: Methyltransferase]]
[[Category: Modification methylase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: S-adenosylmethionine]]
[[Category: Structural genomic]]
[[Category: Thermus thermophilus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 18 09:58:47 2008''

Latest revision as of 13:36, 1 November 2023

Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine

2zif, resolution 2.40Å

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