1y89: Difference between revisions

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{{Seed}}
[[Image:1y89.png|left|200px]]


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==Crystal Structure of devB protein==
The line below this paragraph, containing "STRUCTURE_1y89", creates the "Structure Box" on the page.
<StructureSection load='1y89' size='340' side='right'caption='[[1y89]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1y89]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y89 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y89 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PE5:3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL'>PE5</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_1y89|  PDB=1y89  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y89 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y89 OCA], [https://pdbe.org/1y89 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y89 RCSB], [https://www.ebi.ac.uk/pdbsum/1y89 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y89 ProSAT], [https://www.topsan.org/Proteins/MCSG/1y89 TOPSAN]</span></td></tr>
 
</table>
===Crystal Structure of devB protein===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9KL51_VIBCH Q9KL51_VIBCH] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.[ARBA:ARBA00002681][RuleBase:RU365095]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1Y89 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y89 OCA].  
Check<jmol>
[[Category: Single protein]]
  <jmolCheckbox>
[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y8/1y89_consurf.spt"</scriptWhenChecked>
[[Category: Chruszcz, M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Cymborowski, M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: Lazarski, K.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y89 ConSurf].
[[Category: Lezondra, L.]]
<div style="clear:both"></div>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
__TOC__
[[Category: Minor, W.]]
</StructureSection>
[[Category: Zhang, R.]]
[[Category: Large Structures]]
[[Category: Zheng, H.]]
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
[[Category: Mcsg]]
[[Category: Chruszcz M]]
[[Category: Midwest center for structural genomic]]
[[Category: Cymborowski M]]
[[Category: Protein structure initiative]]
[[Category: Joachimiak A]]
[[Category: Psi]]
[[Category: Lazarski K]]
[[Category: Structural genomic]]
[[Category: Lezondra L]]
 
[[Category: Minor W]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 17:03:47 2008''
[[Category: Zhang R]]
[[Category: Zheng H]]
Retrieved from "https://proteopedia.org/1y89"